Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01718 ATGGGCACAATTAAACCGTTTAGGGAATCCTCTAAAGCCTCTTCGAATTCTTCTCATCCTCCGCCGGTGACTTCCTCTACCGCTCGATTCGAGACCGTTAATGTTTCGCATGATTTCAAGATCAATGGGTACTCCCTCAACAAAGGTATGGGAATTGGGAAATACATTACATCGGATACGTTTGTCGTCGGTGGGTACGAGTGGGCTATCTATTTCTATCCCGATGGTAAGAGTATGGAGGACAACGCGGCTTACGTCTCTATTTTCATAGCGCTTGTCAGCGATGGCGCCGATGTTAGGGCTCTTTTTGAATTGACGCTTTTCGATCAAAGTGGAAAGGGGAATCATAAGGTGCATAGCCATTTTGAAAGGAGGCTGGAGAGCGGTCCATACACCCTCAAGTATCGTGGAAGCATGTGGGGTTATAAACGTTATTTCAAAAGAACGGTTCTGGAGTCATCAGATTACCTTAAAGATGATTGCCTCTCATTTAAATGTGTTGTTGGGGTTGTTAAATCACAAACGGAGGGGCCTAAAATCTATTCTATAACAGCGCCTCCCTCCGACATCGGTCAGCAATTTGGGAAGCTTTTGGAGAGTCGTAAGTGTGCAGATGTTAATTTTGAAGTTGATGGTGAAATATTTCCAGCACACAAGTTGGTCATTGCAGCACGTTCACCTGTATTCAGGGCACAACTTTTTGGCCCATTGAAGGATAAGGATACTCGATGCATTAAGGTTGAGGACATTGAAGCTCCTGTATTTAAGGCATTACTTCATTTCATGTACTGGGACAATTTACCGGACATGCTTGAGCTTGTTGGTGCAAACTCTAGGTGGGCATCAACTTTGATGGCTCAACATCTTCTTGCAGCTGCAGATCGTTATGCATTAGACAGGCTTAAATTGCTTTGTGAGGCTAAACTCTGTGAAGACATCGCCATAAATACTGTGGCGACTACTTTAGCTTTAGCAGAGCAGCACCATTGTTTCCAATTGAAAGCTGCATGCCTCAGATTTATAGCCATGCCTGAAAACTTAAAAGCCGTGATGCAATCGGACGGATTCGATTATCTCAAGGAAAGCTGCCCAGCTGTTCTTACTGAGCTACTACAATATGTGGCAAGAGTGACCGAGCACAACGTCCTCGCTTCTGGATTCGGGAATATGACCTTTTTAGATGGCAGCGATCTGAACGGAAGACGTCCAAGAAGAGGGACACCATTTGCTGCTCTAACCGCAGCAGGAAATGCTATTCGGGCAGTAGCAGATCAAGGTATGCAACGAGTAGAAGTCATGATAAAGGGCCCTGGTCTGGGAAGAGATGCAACGTTAAGAGCTATTCGTAGAAGCGGTATACTCTTAAGTTTCATACGGGATGAATTCGTATCAGGTTGGAATGACGTTGTTAGTGTGGTACCTCTAGGACTGGCAGCTCTCGACCCTGTAAAGAGAGGATTGGCAGCTCTCGATCCTGTAAAGAGAGGTAATCCACCTGTGCTCGCTTGGTTGTGGGAGGTACCTTTAGGATTGGCAACTCTCGACCTTGTAAAGAGAGGTTGGAATGACACTGTTAGTGTGGTACCTCTAGAATTGGCAACTCTCAACCCTGTAAAGAGAGGTTGGAATGACCTTGTTAGTGTGGTACCTCTAGAACTGGAAGCTCTCGACCCTGTTAAGAGAGGATGGAATGACGCTGTTAGTGTGGTACCTTTAGGACTGGCAGCTCTCGACCCTTTAAGGAGAGGGTATTTGATGAATATGGCATTGTCGTTGTCCTCTGCCGTCGGCAAGCAAGTTCAACCACTGGTGGGGAATTTTCAGGGGAGTTTCAGTATGGAGCAGTTTTTCCGGCGGAAAGAGAAGGTGGTTATTGTAATGGGAGCCACCGGAACGGGTAAATCTCGGTTGGCAATCGACTTAGCCACTCGATTTCCGGCGGAAATTGTGAACTCGGACAAGATTCAAGCGTACGAAGGGCTGGATGTTGTCACAAACAAAGTCACCGATGAAGAACGCCGGGGAGTTTCTCACCATTTGTTGGGCTCAATTGACCCGAATTCAAATTTCTCTTCTCATGATTTTACATATCATGCCTCTGTTGCTATTGAATCCATTTTGGCTCGTGATCGTCTCCCGATTGTCGCCGGCGGCTCCAATTCTTACATTGAAGCTCTGGTTGATGATTGGGCAGAGTCTCGATTTCGATATGAGTTTTGTTTTTTGTGGGTCGATGTGTCCTTGCCGATTCTTCAAAAGTTTGTTTCCGACCGTGTTGATCGGATGGTCGACGGTGGATTCGTCGGTGAAGTTAGGGAATTTTTTGATCCGGAAGGAGATTATTCTCGTGGAATTAAACGAGCTATTGGAGTACCGGAATTACACGACTATTTAAGAGCAGAACGCGACGGTGCTGACCAAAGAACTTTGACAATTCTTCTTGAATTAGCCATTTCCAAGATTAAAGACAATACATGCCAATTGGCTCTCCGGCAACTACAGAAGATTCGCCGCCTTCGTAATAAACGGAATTGGAATCTCCGGCGTCTTGATGCCACCGGAGCGTTTTTGACCAACAGTGGGAACCCCAATGACGCATGGGATAAATTCGTTCTTCAACCGAGCTTGAGGATCGTTGACAAATTCCTCACCGACGACAGCCGCCTTATCACCACCCCCATTGTCTCGCCGGAGGCGGCCCCTCTCGTCGCCGCCGTCAGTCGTTGA 2727 46.53 MGTIKPFRESSKASSNSSHPPPVTSSTARFETVNVSHDFKINGYSLNKGMGIGKYITSDTFVVGGYEWAIYFYPDGKSMEDNAAYVSIFIALVSDGADVRALFELTLFDQSGKGNHKVHSHFERRLESGPYTLKYRGSMWGYKRYFKRTVLESSDYLKDDCLSFKCVVGVVKSQTEGPKIYSITAPPSDIGQQFGKLLESRKCADVNFEVDGEIFPAHKLVIAARSPVFRAQLFGPLKDKDTRCIKVEDIEAPVFKALLHFMYWDNLPDMLELVGANSRWASTLMAQHLLAAADRYALDRLKLLCEAKLCEDIAINTVATTLALAEQHHCFQLKAACLRFIAMPENLKAVMQSDGFDYLKESCPAVLTELLQYVARVTEHNVLASGFGNMTFLDGSDLNGRRPRRGTPFAALTAAGNAIRAVADQGMQRVEVMIKGPGLGRDATLRAIRRSGILLSFIRDEFVSGWNDVVSVVPLGLAALDPVKRGLAALDPVKRGNPPVLAWLWEVPLGLATLDLVKRGWNDTVSVVPLELATLNPVKRGWNDLVSVVPLELEALDPVKRGWNDAVSVVPLGLAALDPLRRGYLMNMALSLSSAVGKQVQPLVGNFQGSFSMEQFFRRKEKVVIVMGATGTGKSRLAIDLATRFPAEIVNSDKIQAYEGLDVVTNKVTDEERRGVSHHLLGSIDPNSNFSSHDFTYHASVAIESILARDRLPIVAGGSNSYIEALVDDWAESRFRYEFCFLWVDVSLPILQKFVSDRVDRMVDGGFVGEVREFFDPEGDYSRGIKRAIGVPELHDYLRAERDGADQRTLTILLELAISKIKDNTCQLALRQLQKIRRLRNKRNWNLRRLDATGAFLTNSGNPNDAWDKFVLQPSLRIVDKFLTDDSRLITTPIVSPEAAPLVAAVSR 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13438487 13451818 + CmoCh14G017180.1 Cmo14g01718 396984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01718 908 CDD BACK_AtBPM-like 310 373 IPR034090 -
Cmo14g01718 908 CDD BTB_POZ_BPM_plant 190 310 - -
Cmo14g01718 908 ProSiteProfiles BTB domain profile. 204 263 IPR000210 GO:0005515
Cmo14g01718 908 Pfam IPP transferase 736 838 - -
Cmo14g01718 908 Pfam IPP transferase 656 730 - -
Cmo14g01718 908 ProSiteProfiles MATH/TRAF domain profile. 34 168 IPR002083 GO:0005515
Cmo14g01718 908 SUPERFAMILY TRAF domain-like 31 170 - -
Cmo14g01718 908 Gene3D Ribosomal protein S11 381 465 IPR036967 GO:0003735|GO:0005840|GO:0006412
Cmo14g01718 908 Gene3D - 620 883 IPR027417 -
Cmo14g01718 908 Gene3D Potassium Channel Kv1.1; Chain A 180 307 IPR011333 -
Cmo14g01718 908 Pfam BTB/POZ domain 195 311 IPR000210 GO:0005515
Cmo14g01718 908 SMART math_3 39 151 IPR002083 GO:0005515
Cmo14g01718 908 MobiDBLite consensus disorder prediction 8 27 - -
Cmo14g01718 908 CDD MATH 36 168 IPR002083 GO:0005515
Cmo14g01718 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 778 IPR027417 -
Cmo14g01718 908 SUPERFAMILY Translational machinery components 400 461 - -
Cmo14g01718 908 SUPERFAMILY POZ domain 181 311 IPR011333 -
Cmo14g01718 908 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 15 387 IPR045005 GO:0016567
Cmo14g01718 908 Pfam Ribosomal protein S11 401 460 IPR001971 GO:0003735|GO:0005840|GO:0006412
Cmo14g01718 908 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 748 847 - -
Cmo14g01718 908 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1-LIKE 15 387 - -
Cmo14g01718 908 Gene3D - 313 380 - -
Cmo14g01718 908 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 32 173 IPR008974 GO:0005515
Cmo14g01718 908 MobiDBLite consensus disorder prediction 1 27 - -
Cmo14g01718 908 SMART BTB_4 204 313 IPR000210 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01718 K10523 SPOP; speckle-type POZ protein - csv:101211721 767.689
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g01149 Cmo14g01718 CCT
Cmo14g01718 Cmo17g00266 CCT
Cmo08g01149 Cmo14g01718 ECH
Cmo14g01718 Cmo17g00266 ECH
Cmo06g01443 Cmo14g01718 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01443 Cmo-Chr6:10449608 Cmo14g01718 Cmo-Chr14:13438487 0 dispersed
Cmo08g01143 Cmo-Chr8:7303649 Cmo14g01718 Cmo-Chr14:13438487 2.37E-117 dispersed
Cmo10g01050 Cmo-Chr10:5555476 Cmo14g01718 Cmo-Chr14:13438487 1.25E-139 dispersed
Cmo11g00797 Cmo-Chr11:3941529 Cmo14g01718 Cmo-Chr14:13438487 5.10E-145 dispersed
Cmo14g01718 Cmo-Chr14:13438487 Cmo17g00266 Cmo-Chr17:1592235 0 dispersed
Cmo14g01736 Cmo-Chr14:13532414 Cmo14g01718 Cmo-Chr14:13438487 1.20E-14 dispersed
Cmo19g00049 Cmo-Chr19:287146 Cmo14g01718 Cmo-Chr14:13438487 3.72E-95 dispersed
Cmo19g00659 Cmo-Chr19:7091543 Cmo14g01718 Cmo-Chr14:13438487 6.39E-91 dispersed
Cmo05g00677 Cmo-Chr5:3430942 Cmo14g01718 Cmo-Chr14:13438487 6.85E-10 transposed
Cmo07g01424 Cmo-Chr7:8192214 Cmo14g01718 Cmo-Chr14:13438487 1.51E-09 transposed
Cmo17g00517 Cmo-Chr17:4993052 Cmo14g01718 Cmo-Chr14:13438487 3.87E-19 transposed
Cmo14g01718 Cmo-Chr14:13438487 Cmo17g01140 Cmo-Chr17:9271490 1.57E-100 wgd
Cmo14g01718 Cmo-Chr14:13438487 Cmo17g00259 Cmo-Chr17:1532508 9.52E-117 wgd
Cmo14g01718 Cmo-Chr14:13438487 Cmo06g01441 Cmo-Chr6:10436722 0 wgd
Cmo14g01718 Cmo-Chr14:13438487 Cmo08g01149 Cmo-Chr8:7347603 0 wgd
Cmo14g01718 Cmo-Chr14:13438487 Cmo08g00355 Cmo-Chr8:2196219 1.86E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g416 . . Bda03g01295 . . . . . Cmo08g01149 Cmo17g00266 Cma06g01441 Cma14g01672 Car06g01243 Car14g01506 . Cpe08g00234 Cpe03g01411 Bhi01g00869 Tan10g0903 . Lac12g2339 . . Lcy11g1490 Cla06g00536 Cam06g0578 Cec06g0575 Cco06g0583 Clacu06g0565 Cmu06g0559 Cre06g1327 Cone14ag0811 Cone15ag0810 . . Lsi05g01464 . Chy11g01439 Cme06g00654 . . . . . . . . . Cmo06g01443 Cmo14g01718 Cma08g01178 Cma17g00279 Car08g01054 Car17g00254 Cpe12g00232 Cpe17g00118 Bhi12g01786 . . . . . . Cla05g00586 Cam05g0644 Cec05g0653 Cco05g0648 Clacu05g0638 Cmu05g0606 Cre05g0675 Lsi09g01366 Csa03g01380 Chy06g00622 Cme11g01944
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001625 1 3 2 1 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 3 2 2 2 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11054 PF00651 BTB 2.10E-23 CL0033 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01718 Cmo_Chr14 FPKM 4.917874 3.253995 8.560951 7.257768 9.39912 9.932439 8.430706 9.851623 12.166524 10.382947