Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo14g01721 | ATGGGTATTTCATGGAGTAACAGAAGAAGAAACATCCATCTTCAAAACCCACCTCCGCCGCCGCCGCCGCCTCCTCCTCCACCGCCCTACCTTTCATCTTCCTCTTTCTATTTTCCATCTGAACCCCAATCTCTTTCTCCTACTCCACCACCACCACCGCCGCCGCCGCCGCCACCGCTGCAAACCCATCATTTCACCAATTCCCACCCTCCTCCGCCGCACAGCCATCCTTACGGTCCAACTCCTCATCCTCCTGCCCCTGCGCCTCAATCCTATTACTTTTCCGGTGGGTACAATTCGTGTAATTATGGGAACTCTACGATGGGGCGTTTCAATTTTCACCCTCATTATGCCAATCAGAGTAATGGGTGGCCCCAAATTCGGCCGGGCATGTGTCCGCCGATGCTTCCATCACCGCCTTTGCCTTTGGTGGAGCATCGTCAAACGAAGAAGGTTAGAAATGATGTGAATGTGCATAAGGATACTTTAAGGATTGAGGTGGACGAGCAGAACCCTGATCATCATTTGGTTTCTTTCGTTTTTGATGCTTTGTATGATGGAAGCATAACCATTCTATTCTTCGCCAAGGAAGAGCTCAACTGTAGCTTTGTTCCAGTATATCCCGATGCCTTCAAGCCAGTAAAAGTCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTGGGATTTTTCGACTGCGACGACCTCTCGAAACCTTCACCTGCTGAAGACATTTTCCCTCTTGTTATATCAGCTGAGACTTGTTCGCCCTCTCAGTCGGACGACGAACGAATTGGTGAGCCTCGACGAGATAACTCACACATGCAAATCACTCAAGCTGTTTTGGAGAAGAAAAATGGTAGTCCTTTCCAAGTAAGAGTGATTAGGCAACTACTATGGATTGATGGAGTGAGATATGAATTGCGCGAGATATTCGGAATAGGGAGTTCATCGGCAGAAGGTTTCGACGATAATGACTCCGGGAAGGAGTGTGTGATATGCATGACTGAACCGAAGGATACCGCTGTATTACCATGCCGACATTTGTGCATGTGCACTGATTGTGCCAAGGAACTGAAGCGTCAATCCAACAAATGTCCTATTTGTCGTCAACCGATCGAAGAACTTATCGAAATCAAGATAAACAATAGCGACCCGTGA | 1185 | 48.1 | MGISWSNRRRNIHLQNPPPPPPPPPPPPPYLSSSSFYFPSEPQSLSPTPPPPPPPPPPPLQTHHFTNSHPPPPHSHPYGPTPHPPAPAPQSYYFSGGYNSCNYGNSTMGRFNFHPHYANQSNGWPQIRPGMCPPMLPSPPLPLVEHRQTKKVRNDVNVHKDTLRIEVDEQNPDHHLVSFVFDALYDGSITILFFAKEELNCSFVPVYPDAFKPVKVPFQKGPAQKFFQPVGTGFDLGFFDCDDLSKPSPAEDIFPLVISAETCSPSQSDDERIGEPRRDNSHMQITQAVLEKKNGSPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDSGKECVICMTEPKDTAVLPCRHLCMCTDCAKELKRQSNKCPICRQPIEELIEIKINNSDP | 394 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 13462112 | 13466260 | + | CmoCh14G017210.1 | Cmo14g01721 | 396987 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo14g01721 | 394 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 324 | 388 | IPR013083 | - | |
| Cmo14g01721 | 394 | ProSiteProfiles | Zinc finger RING-type profile. | 339 | 378 | IPR001841 | - | |
| Cmo14g01721 | 394 | PANTHER | MAHOGUNIN | 1 | 393 | IPR045194 | GO:0061630 | |
| Cmo14g01721 | 394 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED | 1 | 393 | - | - | |
| Cmo14g01721 | 394 | MobiDBLite | consensus disorder prediction | 1 | 90 | - | - | |
| Cmo14g01721 | 394 | SMART | ring_2 | 339 | 377 | IPR001841 | - | |
| Cmo14g01721 | 394 | MobiDBLite | consensus disorder prediction | 43 | 89 | - | - | |
| Cmo14g01721 | 394 | SUPERFAMILY | RING/U-box | 332 | 384 | - | - | |
| Cmo14g01721 | 394 | MobiDBLite | consensus disorder prediction | 14 | 33 | - | - | |
| Cmo14g01721 | 394 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 338 | 378 | IPR045195 | - | |
| Cmo14g01721 | 394 | Pfam | Zinc finger, C3HC4 type (RING finger) | 337 | 383 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo06g01437 | Cmo14g01721 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo06g00369 | Cmo-Chr6:1783768 | Cmo14g01721 | Cmo-Chr14:13462112 | 1.13E-88 | dispersed | |
| Cmo08g00768 | Cmo-Chr8:4844330 | Cmo14g01721 | Cmo-Chr14:13462112 | 2.06E-07 | dispersed | |
| Cmo14g00198 | Cmo-Chr14:896777 | Cmo14g01721 | Cmo-Chr14:13462112 | 1.30E-71 | dispersed | |
| Cmo14g01721 | Cmo-Chr14:13462112 | Cmo17g00666 | Cmo-Chr17:6880657 | 1.77E-08 | dispersed | |
| Cmo14g01721 | Cmo-Chr14:13462112 | Cmo06g01437 | Cmo-Chr6:10410455 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo14g01721 | - | - | cmax:111479192 | 642.499 |