Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01736 ATGCCAAAGACAAAAGAAGAGGGAAATCTGAAAGTATTTACTGTGCGAATTTCCCGAACTACCCTCTCCTCCTCTCTCTCTCTCCTCTTTCTCTTCTCTTTCCCACTTGATGAAACCCCAGATTTGGTTCTCTGGATCAGTCTCTTCCATATCTCGTTATCCAAGCTCCTCTGGTTGTTTATGGAGCTTCAGAAGCGTGTAGATCAGAGTCCCCCAGAGAGGAAAGGCCACAAGCGGAAACTGGAGGAGGAATTTGAAGAGGAACGGGAGATCGCGGTGCCTACAGGGGATGCCAAGCAAGCGTTACTCACTGAGGTCAGTGCTCAAGTTGAAATTCTCAATTCCTCTTTTTCATGGAAGGAAGCAGATCGAGCTGCTGCTAAACGAGCTACTCATGTTCTTGCTGAGCTTGCTAAAAACGAAGAGGTAGTAAACGTGATTGTGGAAGGTGGAGCCGTGCCGGCTTTAGTCAAGCATCTACAAGCACCGCTTATTGTTGACGGTGATCGTAGTCTTAAGCCATTCGAGCACGAGGTTGAGAAAGGAAGTGCTTTTGCGCTTGGACTACTGGCTGTAAAGCCTGAGCACCAGCAACTGATAGTTGACATTGGCGCTCTGTCACACCTCGTTGAGCTATTAAAGAGACACAAGGATGGTTCTTCTCGAGCTGTGAATAGTGTTATTCGTAGAGCTGCAGATGCCATTACAAATCTTGCCCATGAGAATAGTTGCATCAAAACACGGGTTAGGATGGAAGGTGGAATTCCTCCGCTTGTTGAATTGCTTGAATTTACTGACACGAAGGTGCAAAGAGCTGCTGCTGGGGCATTACGGACGCTGGCCTTTAAGAATGATGAGAACAAAAATCAGATTGTTGAGTGTAATGCACTCCCTACACTCATTTTGATGCTTCGGTCGGAGGATGCTGCTATACATTATGAAGCGGTTGGTGTTATTGGAAATTTGGTTCACTCATCCCCAAATATAAAGAGAGAAGTTCTTCTTGCTGGAGCTTTGCAACCTGTTATTGGATTACTCAGGTATTCTGACCTTCAGGATTCTTGTCACGAATCATGTCATGTACTTTGTATATTTCTGCTTCAACACGTTTTGTGCCTATCTTCTCACATTTTCAATTTACCTTTGTTGCTCTGCCAATCAGAACTAATATGCTGTGAAGACAAAGTTGATCTCCATTTGTCTAAATTATTTCGTGCTGCTCTGAGAGCCAAAGGGAGGCAGCTTTATTACTTGGGCAATTTGCGGCAACTGATTCAGATTGCAAGATACATCCACCCTTCAATTTCTGTTACGTATCCTTCTTTTTTTAACTTTCTTACTGAACAAATCAAACACTTGCAGATTCACATTGTGCAGAGGGGTGCTGTTCGACCCTTAATTGAGATGCTTCAATCACCTGATGTACAACTACGGGAAATGTCAGCTTTTGCATTGGGGAGGTTGGCACAGGAAACTCATAATCAAGCTGGTATTGCTCATAATGGTGGTCTAATGCCATTACTGAAGCTTCTTGATTCAAAAAATGGTTCTTTGCAACACAATGCGGCATTTGCTCTTTATGGTCTTGCCGATAATGAGGATAATGTATCTGATTTTATTAGAGTGGGAGGAGTTCAGAAGCTGCAAGATGGAGAATTTATAGTGCAAGCAACAAAAGATTGTGTAGCAAAGACACTCAAGAGATTAGAGGAGAAGATACATGGAAGGGTTTTAAATCACTTGTTACATCTAATGCGTGTAGCAGAGAAGGCTGTGCAAAGACGAGTCTCTCTTGCTCTTGCTCATCTTTGTTCACCCGACGATCAGCGGACTATATTTGGTGCAGTTGGAGATCAGCTTGTTACTAGTCTGGAGTTGCTTCTTGGCCTGCTTGGTTCTTCAAGTCTCAAGCAGCAGCTTGATGGTGCTGTTGCGCTTTACAAGCTTGCAAATAAGGCCATGACTCTTTCTCCTGTAGATGCTGCTCCACCATCCCCAACACCACAGGTTTACCTGGGTGAGCAGTATGTGAACAATCCGACACTATCTGATGTGACATTTCTTGTTGAAGGTCGAAGACGCTTCCATGCCCACAGAATCTGCTTGCTTGCTTCTTCAGATGCATTCCGTGCTATGTTTGATGGTGGCTATCGGGAAAAGGATGCAAAGGATATAGAAATTCCAAATATTAGATGGGAAGTTTTTGAGCTAATGATGAGGTTTGCGAAGTTTGAGTTCCAAAAGTTATCAGCATATGAATGGAAGCAATTTGTTTACACTGGATCTGTGGATGTTTCGTTGGATATTGCACAAGATCTCCTGAGAGCTGCCGATCAGTATCTCTTGGAGGGACTTAAACGATTGTGCGAATATACCATTGCACAGGATATATCATTGGAGAATGTTTCAAGCATGTATGAACTTTCAGAAGCCTTCAATGCCATATCTTTGAGGCACACGTGCATCCTTTTTATCTTGGAACAATTCGAAAAACTCGGTGCAATGCCGGGGCACTCTCATCTAATTCAGCGCATACTTCCCGAGATCCGCAATTATTTTGCCAAAGCCTTGACCAAGGCTAACAACCTCCACAGCTCACGGCTATTAAATTTCTTCATTTCTTTATTTTCATCATAA 2637 43.38 MPKTKEEGNLKVFTVRISRTTLSSSLSLLFLFSFPLDETPDLVLWISLFHISLSKLLWLFMELQKRVDQSPPERKGHKRKLEEEFEEEREIAVPTGDAKQALLTEVSAQVEILNSSFSWKEADRAAAKRATHVLAELAKNEEVVNVIVEGGAVPALVKHLQAPLIVDGDRSLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDIGALSHLVELLKRHKDGSSRAVNSVIRRAADAITNLAHENSCIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKREVLLAGALQPVIGLLRYSDLQDSCHESCHVLCIFLLQHVLCLSSHIFNLPLLLCQSELICCEDKVDLHLSKLFRAALRAKGRQLYYLGNLRQLIQIARYIHPSISVTYPSFFNFLTEQIKHLQIHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQETHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLHLMRVAEKAVQRRVSLALAHLCSPDDQRTIFGAVGDQLVTSLELLLGLLGSSSLKQQLDGAVALYKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGRRRFHAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEVFELMMRFAKFEFQKLSAYEWKQFVYTGSVDVSLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEQFEKLGAMPGHSHLIQRILPEIRNYFAKALTKANNLHSSRLLNFFISLFSS 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13532414 13538265 - CmoCh14G017360.1 Cmo14g01736 397002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01736 878 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 72 365 IPR044282 -
Cmo14g01736 878 SMART arm_5 451 490 IPR000225 GO:0005515
Cmo14g01736 878 SMART arm_5 241 282 IPR000225 GO:0005515
Cmo14g01736 878 SMART arm_5 491 531 IPR000225 GO:0005515
Cmo14g01736 878 SMART arm_5 284 324 IPR000225 GO:0005515
Cmo14g01736 878 SMART arm_5 326 372 IPR000225 GO:0005515
Cmo14g01736 878 SMART arm_5 193 240 IPR000225 GO:0005515
Cmo14g01736 878 SMART arm_5 140 192 IPR000225 GO:0005515
Cmo14g01736 878 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 461 503 IPR000225 GO:0005515
Cmo14g01736 878 SUPERFAMILY POZ domain 674 794 IPR011333 -
Cmo14g01736 878 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 295 337 IPR000225 GO:0005515
Cmo14g01736 878 Gene3D Potassium Channel Kv1.1; Chain A 669 826 IPR011333 -
Cmo14g01736 878 SUPERFAMILY ARM repeat 119 549 IPR016024 -
Cmo14g01736 878 Pfam BTB/POZ domain 676 742 IPR000210 GO:0005515
Cmo14g01736 878 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 204 243 IPR000225 GO:0005515
Cmo14g01736 878 Gene3D - 93 221 IPR011989 -
Cmo14g01736 878 Gene3D - 409 660 IPR011989 -
Cmo14g01736 878 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 454 863 IPR044282 -
Cmo14g01736 878 ProSiteProfiles BTB domain profile. 683 741 IPR000210 GO:0005515
Cmo14g01736 878 Pfam Armadillo/beta-catenin-like repeat 249 281 IPR000225 GO:0005515
Cmo14g01736 878 Pfam Armadillo/beta-catenin-like repeat 284 323 IPR000225 GO:0005515
Cmo14g01736 878 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 72 365 - -
Cmo14g01736 878 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 454 863 - -
Cmo14g01736 878 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 253 288 IPR000225 GO:0005515
Cmo14g01736 878 SMART BTB_4 683 797 IPR000210 GO:0005515
Cmo14g01736 878 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 502 544 IPR000225 GO:0005515
Cmo14g01736 878 Gene3D - 222 370 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01736 - - - dzi:111307946 974.156
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01425 Cmo14g01736 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01736 Cmo-Chr14:13532414 Cmo14g01718 Cmo-Chr14:13438487 1.20E-14 dispersed
Cmo14g01736 Cmo-Chr14:13532414 Cmo06g01425 Cmo-Chr6:10346583 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g464 . . . . . Bpe14g01175 . . . . Cma06g01423 Cma14g01691 Car06g01226 Car14g01525 Sed02g1251 Cpe08g00251 Cpe03g01425 Bhi01g00836 Tan10g0863 Cmetu06g0635 . . . Lcy11g1523 . . . . . . . . . Cone7ag0235 Cone4ag0225 Lsi05g01437 . . Cme06g00626 Blo02g00552 . . . . . . . . Cmo06g01425 Cmo14g01736 . . . . . . . . . . . . . Cla05g00562 Cam05g0618 Cec05g0628 Cco05g0623 Clacu05g0614 Cmu05g0582 Cre05g0650 . Csa03g01351 Chy06g00596 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008033 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11055 PF00651 BTB 4.70E-14 CL0033 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01736 Cmo_Chr14 FPKM 1.05848 0.530649 0.081501 0.510177 0.156243 0.846182 0.178005 0.0 0.0 0.138739