Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01742 ATGATCAGGGGAACTTCCGGCAGTTGTATCGGAGTAAGACTGGCAGCGAGTGGGAAACGGCATGGAAAGTGGGTTGAAAGGCCTTGTTTGGTGAATAACATTTGTGGGGTGTTTGGATTTTGCACCTCACCTGACAATGAAACTGTGAATTGTTCGTGCTTGGAAGGGTATTCTTCGATTGATCCAAACACGCCCTCTAAAGGGTGCCAACCAGATCTGGTCATGGACTTTTGTTCATTAGATTCTACACATGAGAGCTTCAAAATTGTTAGGCTTGAAGATGCTGATTTCCCATATCTTAAGGACTCTGATGTTTCCATGGTTGGACCATTGGATGACAGCCAGTGCGAGGAAGCTGTGAGAAAAGACTGTTTTTGCTCGGCTGCCGTTTATTTTAATAATGGTTGCTACAAGAAGAGGATGCCATTGTTAAACGCTAGACGAAGCATTTCGGACACCAATAATCTTGTGGCGTTCCTGAAAGTTCCCATCAATAATGACGGAAAAACACTCATTTCTAACGAAGCTCTGCTAGCGATATTTGTGGTATGTTCAACATTTGCATTGCTTTTTGCAGTCGTTTCCGTCTATTATCAGCCCTTTCTTACAAGGGGTTTGTTTAAAGAAAAGAAACCTGCAAAGCTGAATCAGTTGGAGGTGAATTTGAAGGCATTTTCATTGAATGAATTGAAAGAAGCAACAAATGGATTCCAAAAGCAACTTGGGAGTGGAGCTTTTGGTACAGTCTATCATGGGGTTTTGAGGTTGAGAGATCAAGAAGTGGAGGTTGCAGTAAAGAAATTGAAGAAGCTGACTGAACATGGAGAGGAGTTCTTAACAGAAGTCCAAATAATTGGTTTGACTCATCATAGAAACCTGGTTCAATTGTTGGGATTCTGCAACGAGGGAGATGATCGGTTGTTGGTTTTTGAGTTCATGAAAAATGATACCTTGTCAAGTTTCCTGTTTGGGGGGAAGGAAAATGAAAAGCCCAAATGGGAAAGCAGAGCAAAAATGGTGTTGGAAATCGCCAGTGGGTTGTCATATTTGCACGAAGAGTGCGAAACCCAGATCATCCACTGCGATATAAAGCCACAGAACATTCTCCTTGACCACAATTACAGAGTGAAAATCTCAGATTTCGGCATAGCTAAGTTGATGAAGAAAGACCAGACACGCACAGACACGATGATGAGAGGAACAAGGGGATACATGGCGCCAGAATGGATGAGAGGTTTACCTGTTACCAAAAAAGTTGACGTTTACAGCTTTGGAGTGGTTTTGTTAGAGACCATCTTTTGCAGAAGGCATGTTGTAAAAGAGATAGAAGCCTCTGATGCAACATTTCTGGTGGACTGGGTTGTAAGTTGTTTGAGAGCAGAAAGATTGAGAGACGTGATAAGCCAGGATTCTGAAGCAGTGAATGACTATGAAAGGTTTAAGAGGATGGCAATGGTGGGTCTGTGGTGCTTGTCTTCGGATCCGGTACGCCGCCCATCCATGAAAGACGTTGAACGGATGCTAGAAGGAAGCATTGAGCTTCCGGATCAGACCATTTCAGAAGCACGATTGTTCAGAAACTTCAATCCGTCCACCATGGCCAACATCCTCATGCTTCTTTCCTTTCTCCTTATGAACTTCCATGAGTGTTTGGCTCAAACTGGCTCCGCCATAAGCCCGGGTTCCTCCATTACTGCAGGATCTACCCATTCCTGGGTTTCTCCATTAGGGGACTTTGCTTTCGGTTTCTATCATCTTTCCAACGATCTCTACCTTGCCGGAATTTGGTTTGATAAAATCCCCGAAAAGATACTGGTTTGGTCGGCCAACCGTGACAATCCGGCGCCGCTGGATTCCGTCGTCCAGTTGAACAACACCGGCCATTTTGAAATTCTGTCCCCAACCGGCTCCATTATTCCATCAACATTTACAGAGCAGAAGACCCCTGCAAGTTCCGGCCAAATGCAAGACGATGGCAACTTGGTGTTGAAAAACGCCAATCCTGAGGCCGTCTGGCAAAGCTTCGATTGGCCGACAGACACGCTCCTTCCCGGACAGGTTTTGGGCGTCGACAAAAAAATGTTCTCTGCAAGAACCAGCTCAGATTTCTCAACTGGGAATTTCATGTTGCAAATGCAAAGCGATGGGAATCTGGTGCTTTCCAATTACCTCTTCTCTAATATTGGGTATTGGTTCACAATAGCAACAGAGGTTGCAAACACTGTCTTGATGTTCAATAACTCTGCTTCAATGTTCCTTACCAATGGAACTTCCCCAATTGGACAGATATTTCGCAATTTGACAGTTAATGATCAAGCCCCAATTAAGGATTACTATCACAGAGCAACGATCGGTGTCCATGGCGATTTTCGACAATATATTCACCACAAGACAGACAGAAATGAATGGAAAAAGATTTGGGGAGCCATGAGCGATCCTTGCCTTGTGAACACAGTTTGCGGCTTAAATGGTCTCTGCATATCATCCGACAACGACACAGTAACCTGCGATTGCTTGCCGGGCTTTGTTCATTTGGATCCGACCGATGCTATGAAAGGATGTCGGCCAAAAACAGTGGACAATTACCGTAGTGAAGATTATGGGAAGACATTCGAGATCCAGGTGATCAATGATGTCGATATCGACTTCCCCCCTGGAGCAGGACAATTTTCAGTATTGGCTACTACAAACGACGTTGATGTTGAGGGATGCAAACAGGCAATCCTCGGGGATCGTTATGCCATGGCTGCAACTTTGAATGGCAGGACATGTCTTAGCAAAAGGACGCCATTAATGAATGCTAGAAATACTTCCAATACTAAAGGATTAAGAACTCTGATCAAAGTGCCTTCAGGAAACAGTCCGATGGGTTTAAACAACAAACCAAAAGACAAATCGAAATACCGAAAGTTCTTGGAGATCGGCAATATAATCGCTGGAGTTCTTGCTTTTTGCTTCGGAGTCGTTGCCCTCTTCTCTCATCCCATAACTGGAAGATTGTTGAGAAGGAAGCAACGTTCAAGTGCAAGTGCCATCGGAATCAATTTCCGGGAATTCACTTACCAGGAATTGGATGATGCAACCGATGGATTCCACAGGATCCTCGGCCGGGGATCTTCGGGTAAAGTGTTCAGCGGAGATTTACACATAGACGGTGTTGAGGTGGAAATTGCAGTGAAACTGCTCGATAAAATGCATGAAAGAACTGAAAATGAGTTCGTGACGGAGCTCACAATCATCGGCCGGACGTATCACAAGAATTTGGTCCGATTGTTAGGTTACTGCATCGAAAAGGAGAATCAATTTCTTCTAGTGTATGAGCTAATGCCGAGGGGAGCACTATCAGGTTTCCTATTTGGCAGTGGCGAAAACCCTAATTGGGCACAGAGGGTCGAAATTGCGTTGGGAATAGCGAGAGGATTAGCGTACTTACACGAAGGGTGCGAGACGCAGATCATCCATTGCGACGTGAAGCCCCAAAACGTACTCCTCGACGCCAATTACACAACGAAAATCGCAGATTTTGGGATATCGAAGCTGTTGATGAAGGACCAAACGAGAACAAACACGGAGGCGAGAGGGACATTTGGGTACATGGCGCCGGAGTGGCTGAGGGGAGCTCCGGTGACGGCAAAGGTGGATGTATTCAGCTATGGGGTAATGCTGTTGGAGATAATTTGCCGTAGAAGGAACGTTGAGTTGGATCGAGTGGAAGAAGAAAGTGAGGAGGAGGACTTGGTTTTATCGAATTGGGTTCTGAGTTGCGCGGCGGCCGGTAAACTGGAGACGGTGGTGGGAGATGAGCCGGAAACATTAAGGGATTTGGACAGGTTTGAAAGGATGGCAATGGTGGGGTTATGGTGCATTCATCCAGATGCGTCTCAAAGACCATCCATGAAGAAGGTGACCCAAATGTTAGAAGGCACGGACGATGTTGGAACCCCTCCTCAGCTCCTGCGCGCCACAACCTCCTCCTCAGCTGCTCTACTTCTGTCGACCGGCTCCATCCCTTTAAGTGAATAA 4023 45.61 MIRGTSGSCIGVRLAASGKRHGKWVERPCLVNNICGVFGFCTSPDNETVNCSCLEGYSSIDPNTPSKGCQPDLVMDFCSLDSTHESFKIVRLEDADFPYLKDSDVSMVGPLDDSQCEEAVRKDCFCSAAVYFNNGCYKKRMPLLNARRSISDTNNLVAFLKVPINNDGKTLISNEALLAIFVVCSTFALLFAVVSVYYQPFLTRGLFKEKKPAKLNQLEVNLKAFSLNELKEATNGFQKQLGSGAFGTVYHGVLRLRDQEVEVAVKKLKKLTEHGEEFLTEVQIIGLTHHRNLVQLLGFCNEGDDRLLVFEFMKNDTLSSFLFGGKENEKPKWESRAKMVLEIASGLSYLHEECETQIIHCDIKPQNILLDHNYRVKISDFGIAKLMKKDQTRTDTMMRGTRGYMAPEWMRGLPVTKKVDVYSFGVVLLETIFCRRHVVKEIEASDATFLVDWVVSCLRAERLRDVISQDSEAVNDYERFKRMAMVGLWCLSSDPVRRPSMKDVERMLEGSIELPDQTISEARLFRNFNPSTMANILMLLSFLLMNFHECLAQTGSAISPGSSITAGSTHSWVSPLGDFAFGFYHLSNDLYLAGIWFDKIPEKILVWSANRDNPAPLDSVVQLNNTGHFEILSPTGSIIPSTFTEQKTPASSGQMQDDGNLVLKNANPEAVWQSFDWPTDTLLPGQVLGVDKKMFSARTSSDFSTGNFMLQMQSDGNLVLSNYLFSNIGYWFTIATEVANTVLMFNNSASMFLTNGTSPIGQIFRNLTVNDQAPIKDYYHRATIGVHGDFRQYIHHKTDRNEWKKIWGAMSDPCLVNTVCGLNGLCISSDNDTVTCDCLPGFVHLDPTDAMKGCRPKTVDNYRSEDYGKTFEIQVINDVDIDFPPGAGQFSVLATTNDVDVEGCKQAILGDRYAMAATLNGRTCLSKRTPLMNARNTSNTKGLRTLIKVPSGNSPMGLNNKPKDKSKYRKFLEIGNIIAGVLAFCFGVVALFSHPITGRLLRRKQRSSASAIGINFREFTYQELDDATDGFHRILGRGSSGKVFSGDLHIDGVEVEIAVKLLDKMHERTENEFVTELTIIGRTYHKNLVRLLGYCIEKENQFLLVYELMPRGALSGFLFGSGENPNWAQRVEIALGIARGLAYLHEGCETQIIHCDVKPQNVLLDANYTTKIADFGISKLLMKDQTRTNTEARGTFGYMAPEWLRGAPVTAKVDVFSYGVMLLEIICRRRNVELDRVEEESEEEDLVLSNWVLSCAAAGKLETVVGDEPETLRDLDRFERMAMVGLWCIHPDASQRPSMKKVTQMLEGTDDVGTPPQLLRATTSSSAALLLSTGSIPLSE 1340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13568320 13574654 - CmoCh14G017420.1 Cmo14g01742 397008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01742 1340 Gene3D Transferase(Phosphotransferase) domain 1 313 525 - -
Cmo14g01742 1340 SUPERFAMILY alpha-D-mannose-specific plant lectins 605 696 IPR036426 -
Cmo14g01742 1340 Gene3D Phosphorylase Kinase; domain 1 1002 1108 - -
Cmo14g01742 1340 Pfam D-mannose binding lectin 605 695 IPR001480 -
Cmo14g01742 1340 PANTHER SERINE/THREONINE-PROTEIN KINASE 536 1318 - -
Cmo14g01742 1340 PANTHER SERINE/THREONINE-PROTEIN KINASE 25 514 - -
Cmo14g01742 1340 SMART blect_4 563 678 IPR001480 -
Cmo14g01742 1340 ProSitePatterns Protein kinases ATP-binding region signature. 241 267 IPR017441 GO:0005524
Cmo14g01742 1340 SUPERFAMILY Protein kinase-like (PK-like) 220 536 IPR011009 -
Cmo14g01742 1340 Gene3D Phosphorylase Kinase; domain 1 202 312 - -
Cmo14g01742 1340 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 536 1318 - -
Cmo14g01742 1340 Gene3D - 550 675 IPR036426 -
Cmo14g01742 1340 SUPERFAMILY Protein kinase-like (PK-like) 1016 1318 IPR011009 -
Cmo14g01742 1340 SUPERFAMILY alpha-D-mannose-specific plant lectins 698 757 IPR036426 -
Cmo14g01742 1340 Pfam Protein tyrosine and serine/threonine kinase 1032 1305 IPR001245 GO:0004672|GO:0006468
Cmo14g01742 1340 CDD B_lectin 573 678 IPR001480 -
Cmo14g01742 1340 Gene3D - 676 760 IPR036426 -
Cmo14g01742 1340 ProSiteProfiles Protein kinase domain profile. 1029 1318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g01742 1340 Pfam Protein kinase domain 238 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g01742 1340 ProSiteProfiles EGF-like domain profile. 810 848 IPR000742 -
Cmo14g01742 1340 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 25 514 - -
Cmo14g01742 1340 Gene3D Transferase(Phosphotransferase) domain 1 1109 1314 - -
Cmo14g01742 1340 SMART egf_5 28 70 IPR000742 -
Cmo14g01742 1340 SMART egf_5 813 855 IPR000742 -
Cmo14g01742 1340 CDD STKc_IRAK 241 510 - -
Cmo14g01742 1340 ProSiteProfiles Bulb-type lectin domain profile. 555 676 IPR001480 -
Cmo14g01742 1340 Pfam S-locus glycoprotein domain 777 843 IPR000858 GO:0048544
Cmo14g01742 1340 SMART serkin_6 1029 1306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g01742 1340 SMART serkin_6 235 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g01742 1340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1152 1164 IPR008271 GO:0004672|GO:0006468
Cmo14g01742 1340 ProSiteProfiles Protein kinase domain profile. 235 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g01742 1340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672|GO:0006468
Cmo14g01742 1340 ProSitePatterns Protein kinases ATP-binding region signature. 1035 1060 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01742 - - - bhj:120084699 1125.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01742 Cmo-Chr14:13568320 Cmo20g00069 Cmo-Chr20:371885 9.98E-128 dispersed
Cmo14g01742 Cmo-Chr14:13568320 Cmo20g00068 Cmo-Chr20:369013 8.43E-115 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g481 . . . . . . . . . . . Cma14g01697 . Car14g01528 . . . Bhi01g00821 . . . . . Lcy11g1537 . . . . . . . . . . . Lsi05g01426 . . . . . . . . . . . . . Cmo14g01742 . . . . . . . . . . . . . Cla05g00552 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001427 0 3 0 0 0 4 2 3 3 1 2 4 2 1 5 1 4 1 1 4 0 4 3 2 7 6 3 2 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74870 PF07714 PK_Tyr_Ser-Thr 9.00E-45 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01742 Cmo_Chr14 FPKM 12.322349 14.061563 1.088762 1.03144 1.570966 0.812586 1.311293 0.0 0.0 0.0