Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01744 ATGAACCTTCGCCTTCCAGTTCCTTCTTCACCGATTCCTCTCGTAGCTTCTAACACTCTTCTCACTGCTCTTTTCCTTGCTTCTATCTGCTGCCGGAATCTCTGTCTTCTTGTTCATTCTGCAACCTGCTTGCTCGGTTCAACTATTTTGATCGTTGCTGCTTCTGAGATTGAATGTAGTGATATTTTGAAATCTTGCTGCTCTGTTTATATTGGAAATGTTGTAATAATTATGGCCGAACCAATATACACTGTAGCTTCTGATAGTGAAACCACTGGGGAGGATAGATCAGCATCAATCTTTCCGGAAATTGCTGTTGGAATTGATATTGGTACTTCACAGTGTAGTATTGCAGTCTGGAATGGATCTCAGGTTGAGCTTCTTAAGAACACTAGAAATCAGAAGATTATGAGATCATATGTCACCTTCAAGGATGATACTCCTTCTGGTGGAGTTATTAATGAGCTAAGTCAGGAGTATGACATGCTCTCTGGTGCTGCAATTTTCAATATGAAACGCTTGATTGGAAGAGTTGACACTGACCCAGTTGTTCATGCAAGCAAGAGCCTTCCTTTTCTAGTGCAAACTTTGGACATTGGTGTTCGTCCATTTGTTGCAGCTTTGGTGAACAATATATGGAGATCTACCACTCCTGAAGAAGTTCTGGCAATCTTTCTTGTTGAACTGAAAATGATGGCTGAACATCAACTGAAGCGGCCAATTAGAAATGTTGTTTTAACAATTCCGGTTTCGTTCAGCCGATTTCAGCTTACTCGGGTGGAACGAGCTTGTGCGATGGCTGGCCTTCAAGTCAGGTTGATGCCTGAACCAACAGCAGTAGCTTTATTGTATGCCCAACAACAGCAGCAGCAGGCTGTACATGAGAACATGGGCAGTGGAAGTGAAAAGATCGCCCTTATTTTCAACATGGGAGCTGGATATTGTGATGTTGCTGTATCAGCCACAGGGGGAGGAGTGTCACAGATCAAAGCCCTGGCTGGAAGTCCTATTGGAGGTGAAGATCTACTTCAAAATACCATGAAGTATCTTTTGCCAAATGCGGAATCTATATTTTCACACCGTGGAATCGATGAGATCAGAAGGATGGGGTTACTCCGAGTTGCGACCCAAGATGCTATCCACAAGCTTTCATTCCAGTCGAGTGTTCAAATCGATGTGAACTTGGGAAATGGGTCTAAGTTATGCAAGGTTCTAAGCCGAGAGGAGTTCGAGATGGTGAATAGCGAGGTGTTTGAGAAATGTGAGAACCTTGTAAATCAATGCTTACACGATGCAAGAGTAGGGATTGATGATTTGAGCGACGTAGTAGTAGTTGGTGGATGTTCGAACATACCAAAGATCAGAAGTTTTCTGATGGAAAAAAGCAAAAAGAAGGCACTTTATGAAGGAATGAATCCTTTAGAAGCTGCTGTCTGTGGTGCAGCTTTAGAAGGTGCAGTAGCATCGGGCATTGCCGATCCGTTTGGAAGTTTAGATCTCCTTAGCATCCAAGCAACGCCTCTCGCCATTGGAATTCGAGCTGATGGAAACAGCTTCATTCCAATTATTCCCAAGAACACTACAATGCCAGCACGCAAGGAGTTGGTTTTCACAACTGTAAAAGACAATCAAAGCGAGGCCCTGATTGTTGTATATGAAGGCGAAGAGACAAGAGCAGAAGAAAATCATCTACTTGGCTATTTCAAGATCATTGGAATTCCACCAGCACCCAAAGGAATCCCTGAAATTACTATCTGTATGGACATTGACTCCTCAAATATGCTTAGAGTTCTAGCTGGGGCAAGACTCCCAGGTGCTCAACACCCTGCAACCCCTTTCATGGAAGTCAAGATGCCAACCGTCGACGACGGGCAAGGCTGGTGTGCAGAGGCTCTGCATGGAAAATATGGTGCTGCCATGGACTTGGTTTCATTGCGGAAGAAAAGCTAG 1950 43.9 MNLRLPVPSSPIPLVASNTLLTALFLASICCRNLCLLVHSATCLLGSTILIVAASEIECSDILKSCCSVYIGNVVIIMAEPIYTVASDSETTGEDRSASIFPEIAVGIDIGTSQCSIAVWNGSQVELLKNTRNQKIMRSYVTFKDDTPSGGVINELSQEYDMLSGAAIFNMKRLIGRVDTDPVVHASKSLPFLVQTLDIGVRPFVAALVNNIWRSTTPEEVLAIFLVELKMMAEHQLKRPIRNVVLTIPVSFSRFQLTRVERACAMAGLQVRLMPEPTAVALLYAQQQQQQAVHENMGSGSEKIALIFNMGAGYCDVAVSATGGGVSQIKALAGSPIGGEDLLQNTMKYLLPNAESIFSHRGIDEIRRMGLLRVATQDAIHKLSFQSSVQIDVNLGNGSKLCKVLSREEFEMVNSEVFEKCENLVNQCLHDARVGIDDLSDVVVVGGCSNIPKIRSFLMEKSKKKALYEGMNPLEAAVCGAALEGAVASGIADPFGSLDLLSIQATPLAIGIRADGNSFIPIIPKNTTMPARKELVFTTVKDNQSEALIVVYEGEETRAEENHLLGYFKIIGIPPAPKGIPEITICMDIDSSNMLRVLAGARLPGAQHPATPFMEVKMPTVDDGQGWCAEALHGKYGAAMDLVSLRKKS 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13583561 13586514 - CmoCh14G017440.1 Cmo14g01744 397010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01744 649 Gene3D - 169 224 - -
Cmo14g01744 649 SUPERFAMILY Actin-like ATPase domain 302 487 IPR043129 -
Cmo14g01744 649 ProSitePatterns Heat shock hsp70 proteins family signature 3. 442 456 IPR018181 -
Cmo14g01744 649 Pfam Hsp70 protein 105 602 IPR013126 GO:0005524|GO:0140662
Cmo14g01744 649 Gene3D - 289 468 - -
Cmo14g01744 649 PANTHER HEAT SHOCK PROTEIN 70KDA 81 648 IPR013126 GO:0005524|GO:0140662
Cmo14g01744 649 PRINTS 70kDa heat shock protein signature 104 117 - -
Cmo14g01744 649 PRINTS 70kDa heat shock protein signature 580 596 - -
Cmo14g01744 649 PRINTS 70kDa heat shock protein signature 244 264 - -
Cmo14g01744 649 PRINTS 70kDa heat shock protein signature 499 518 - -
Cmo14g01744 649 PRINTS 70kDa heat shock protein signature 439 455 - -
Cmo14g01744 649 PRINTS 70kDa heat shock protein signature 132 144 - -
Cmo14g01744 649 PRINTS 70kDa heat shock protein signature 471 491 - -
Cmo14g01744 649 Gene3D - 106 486 - -
Cmo14g01744 649 CDD HSP70_NBD 106 486 - -
Cmo14g01744 649 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 501 600 IPR029047 -
Cmo14g01744 649 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 497 610 IPR029047 -
Cmo14g01744 649 Gene3D Actin; Chain A, domain 4 339 420 - -
Cmo14g01744 649 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 81 648 - -
Cmo14g01744 649 SUPERFAMILY Actin-like ATPase domain 104 286 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01744 K09489 HSPA4; heat shock 70kDa protein 4 - csv:101206971 1031.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01744 Cmo-Chr14:13583561 Cmo04g02760 Cmo-Chr4:19963206 5.88E-90 dispersed
Cmo14g01744 Cmo-Chr14:13583561 Cmo15g00410 Cmo-Chr15:1867166 4.07E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g487 . . . . . . . . . . . Cma14g01701 . Car14g01537 Sed12g0915 . Cpe03g01430 Bhi01g00820 Tan10g0851 Cmetu06g1845 . Hepe05g1544 . Lcy11g1539 . . . . . . . . . . . Lsi05g01597 Csa02g01145 . Cme06g00615 . Blo07g00214 Bda11g00572 . . Bpe13g00611 . Bma06g01551 . . Cmo14g01744 . . . . . . . . . . . . . Cla05g00551 Cam05g0599 Cec05g0610 Cco05g0607 Clacu05g0597 Cmu05g0567 Cre05g0635 . Csa03g01338 Chy06g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010241 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01744 Cmo_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0