Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01749 ATGTTATGTTTCAGTTGTTCGAAGTCGTCGACTCCTCGAATCGCTCATCACTTGGCTTCACTATCAGCGCTGATTAGCGGCATCGATCAAATCAAAATGGCAAGCTCAAGTGAGAGTGAACGCAAGGAACCAGTGAACGAGCAAATGGTTGCAAACATGTATGGTGCTTTAAGGTCTGAGCTCAATCAGATATACTCAAAAATCACAGAACTCGAGATGGAAGTCAGTGAACACTCTCTGGTCATTTCTGCAATTGAGCCACTTGATCCATCAAGACGATGCTACAGAATGATCGGGGGAGTGCTGGTGGAAAGAACTATCAAAGAGGTCCTGCCCGCTGTTCAACGCAACAAAGAGGGACTTGAGGAGGTGATTTCCAGACTCAATGAGGCATTGGAGAAGAAAAAGAAGGAAATTTCTGACTTGGAGGCCAAATACAAGATCAGGATTCGAAAGCCTGATGGTGAGGCTAAGGAGGAAGACAGTGGGCGGAAAGAGGGTGCAGCCCAAGGAGTCTTAGTAGGCCCTGCAAGTGAAAGTTAA 543 46.41 MLCFSCSKSSTPRIAHHLASLSALISGIDQIKMASSSESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEVSEHSLVISAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRIRKPDGEAKEEDSGRKEGAAQGVLVGPASES 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13595687 13599229 + CmoCh14G017490.1 Cmo14g01749 397015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01749 180 PANTHER PREFOLDIN SUBUNIT 2 33 175 IPR027235 GO:0006457|GO:0016272
Cmo14g01749 180 MobiDBLite consensus disorder prediction 151 180 - -
Cmo14g01749 180 Coils Coil 54 74 - -
Cmo14g01749 180 Pfam Prefoldin subunit 48 150 IPR002777 GO:0006457|GO:0016272|GO:0051082
Cmo14g01749 180 SUPERFAMILY Prefoldin 51 149 - -
Cmo14g01749 180 Coils Coil 111 152 - -
Cmo14g01749 180 MobiDBLite consensus disorder prediction 151 166 - -
Cmo14g01749 180 Gene3D - 43 154 IPR009053 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01749 K09549 PFDN2; prefoldin subunit 2 - csv:101203077 281.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01749 Cmo-Chr14:13595687 Cmo06g01414 Cmo-Chr6:10294064 1.86E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g505 . . . . . Bpe14g01188 . . . . . Cma14g01706 Car06g01217 Car14g01541 . Cpe08g00258 Cpe03g01434 Bhi01g00814 . . . Hepe05g1550 . . . . . . . . . Cone14ag0854 . . . Lsi05g01603 . . . . . . . . . Bma02g00847 . . . Cmo14g01749 . . . . . . . . . . . . . Cla05g00544 Cam05g0595 Cec05g0605 Cco05g0602 Clacu05g0592 Cmu05g0562 Cre05g0631 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003116 1 3 2 2 2 1 3 1 1 1 1 1 2 1 2 2 1 3 2 1 2 2 2 1 1 1 1 4 1 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01749 Cmo_Chr14 FPKM 31.504875 38.08223 43.81628 46.067699 15.359072 16.235495 15.028111 11.329526 11.789116 11.348063