Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01759 ATGAACTCGTCGACAATCTCCGTCCGCCCGTTCAATCTCTCCGACGCCGACGACTTTCTCAGGTGGGCCGGCGATGACAGAGTAACCCGCTATCTCCGATGGAACACAATAACCTCCAAAGAAGAAGCATTAACTTACCTAGAGAAGGTCGCGATCCCCCATCCATGGCGGCGGTCCATTTGCCTGAACGGCCATTCCGTCGGGTACGTTTCGGTCAAGCCGGAATCAGAGGAGAAATGCAGAACGAATATCAGTTATGCGGTGGCTGCAGAGCACTGGGGAAGAGGGATAGCCACGGCAGCACTGAGGGCGGCAATTCCGGCGGCGCTGATAGATTTCCCGGAGGTGGTTAGGATTCAGGCGCTGGTGGAGGTGGAGAATGAGGGATCACAGAGGGTTTTGGAAAAATTGGGGTTTTGCAGAGAGGGGCTGTTGAGGAAATACGGATTTTTCTCAATCTCGCGCTTCGAAAACCCAATTCTGTCCTTCCCTACTTCCTATAAGATACGCCGGAAGCCGGCTCCTCCCGGCGTCGGAGCCTTCAAGCGGAGTCGACAGCCGCCATCGTCGCTGCTGCCTTGTCGGAACAGTCCTAAAGACGACATGTCTGTCGCCGTTCCCATGTCGCAAATGGACGTGGATGACGAGTCATTGCCTAATTCTCGGAGTGGTAATGACAGAGAAGGATTGCTTCCGTATAATGGTAAAAGTACTGCTCATAAGAAGTATTTCTCGAGCACCATTAAAATTTTTGGGGTGGACCTATCTCCAGATAATGTGGCTGTCGCCATGGTTTATTTTGTTCAAGGGGTTTTAGGCCTAGCAAGGCTTGCGGTCAGTTTTTACTTAAAGGATGATCTGCACCTAGATCCTGCAGAGACAGCTGTAGTATCTGGCTTCTCTGCATTTCCGTGGCTTGTCAAACCTTTATATGGGTTTATCAGTGATTCTGTTCCTCTTTTTGGTTATCGGAGAAGATCGTACTTGATTTTATCAGGACTGCTTGGTGCACTTTCGTGGACTTTAATGGCCACACTTGTCGATAGCAAGTATGGTGCTGCTTTCTGTATACTCCTTGGATCGCTTTCCGTAGCATTCTCAGATGTTGTTGTAGATTCCATGGTAGTTGAGAGGGCTCGTGGTGAATCCCAAAGTATGTCAGGATCTCTTCAGTCCTTATGTTGGGGGTCTTCAGCTTTTGGTGGAATAGTGAGTTCCTACTTTAGTGGTTCACTGGTGGATGCATATGGTGTAAGGTTTGTTTTTGGAGTCACGGCTTTGTTGCCATTGATAACATCTGTGGTGGCAGTTCTTGTGAAAGAGCAGCCTGTGAGAGGAATAAATCGTCCTTCAGCTAGCTATAATTTTCTTGGGAGCTCAAGACAGCACGTTGTTGAATTGTGGGATGCTGTTAGTCAACGAAATGTGTTTCTTCCAACATTATTTATTTTCTTGTGGCAGGCAACACCACAATCAGATTCTGCCATGTTCTTCTTTACCACAAATAAACTTGGATTCACTCCCGAATTTCTAGGGCGTGTCAAGCTTGTTACATCAATAGCATCGCTGCTTGGCGTTGGGCTTTATAATGGATTTCTTAAGAAAGTCCCTCTGAGGAAAATTTTTCTAGTAACCACCATTTTTGGCAGTGCACTTGGAATGAGCCAGGTTCTCCTTGTAACGGGGATAAATCGTGAGTGGGGTATAAGCGACGAGTGGTTTGCGATTGGGGATTCGTTGATTATAACGGTTCTTGGCCAGGCGTCTTTCATGCCTGTTCTTGTTCTAGCAGCAAAATTATGTCCAGAAGGAATGGAAGCCACACTTTTTGCAACCCTCATGTCCATATCAAACGGAGGGAGTCTGCTAGGTGGCCTGATTGGTGCCGGTTTGACACAACTGTTCGGCGTCACCAAAGACTCGTTCCATAATCTATCCACCTTGATAATCCTGTGCAACCTTAGTTCACTGTTGCCATTGCCACTGCTCGGCCTCCTTCCCCAGGAATCCCCAGACTCAAACTCAGAGACCACTGACATGGAGTTGAAGTCTAACTAA 2058 47.81 MNSSTISVRPFNLSDADDFLRWAGDDRVTRYLRWNTITSKEEALTYLEKVAIPHPWRRSICLNGHSVGYVSVKPESEEKCRTNISYAVAAEHWGRGIATAALRAAIPAALIDFPEVVRIQALVEVENEGSQRVLEKLGFCREGLLRKYGFFSISRFENPILSFPTSYKIRRKPAPPGVGAFKRSRQPPSSLLPCRNSPKDDMSVAVPMSQMDVDDESLPNSRSGNDREGLLPYNGKSTAHKKYFSSTIKIFGVDLSPDNVAVAMVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVVSGFSAFPWLVKPLYGFISDSVPLFGYRRRSYLILSGLLGALSWTLMATLVDSKYGAAFCILLGSLSVAFSDVVVDSMVVERARGESQSMSGSLQSLCWGSSAFGGIVSSYFSGSLVDAYGVRFVFGVTALLPLITSVVAVLVKEQPVRGINRPSASYNFLGSSRQHVVELWDAVSQRNVFLPTLFIFLWQATPQSDSAMFFFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKKVPLRKIFLVTTIFGSALGMSQVLLVTGINREWGISDEWFAIGDSLIITVLGQASFMPVLVLAAKLCPEGMEATLFATLMSISNGGSLLGGLIGAGLTQLFGVTKDSFHNLSTLIILCNLSSLLPLPLLGLLPQESPDSNSETTDMELKSN 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13633825 13642512 - CmoCh14G017590.1 Cmo14g01759 397025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01759 685 SUPERFAMILY MFS general substrate transporter 263 660 IPR036259 -
Cmo14g01759 685 Pfam BT1 family 269 437 IPR039309 -
Cmo14g01759 685 Pfam BT1 family 454 670 IPR039309 -
Cmo14g01759 685 Pfam Acetyltransferase (GNAT) domain 8 139 IPR000182 GO:0016407
Cmo14g01759 685 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 6 170 IPR000182 GO:0016407
Cmo14g01759 685 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1 CHLOROPLASTIC 199 679 - -
Cmo14g01759 685 CDD MFS_FBT 260 653 - -
Cmo14g01759 685 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 3 150 IPR016181 -
Cmo14g01759 685 MobiDBLite consensus disorder prediction 174 199 - -
Cmo14g01759 685 TIGRFAM fbt: folate/biopterin transporter 243 678 IPR004324 GO:0016021
Cmo14g01759 685 Gene3D - 1 158 - -
Cmo14g01759 685 Gene3D MFS general substrate transporter like domains 260 658 IPR036259 -
Cmo14g01759 685 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 199 679 IPR039309 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01759 - - - mcha:111009427 880.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00483 Cmo-Chr2:2656639 Cmo14g01759 Cmo-Chr14:13633825 5.11E-33 dispersed
Cmo12g00322 Cmo-Chr12:2007983 Cmo14g01759 Cmo-Chr14:13633825 3.36E-48 dispersed
Cmo14g01759 Cmo-Chr14:13633825 Cmo20g00959 Cmo-Chr20:5219065 2.41E-38 dispersed
Cmo14g01759 Cmo-Chr14:13633825 Cmo14g01760 Cmo-Chr14:13642867 3.03E-39 tandem
Cmo14g01759 Cmo-Chr14:13633825 Cmo17g00216 Cmo-Chr17:1268618 0 wgd
Cmo14g01759 Cmo-Chr14:13633825 Cmo06g01403 Cmo-Chr6:10261955 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g523 . . . . . . . . . . . . . . Sed02g1304 . Cpe03g01443 Bhi01g00794 Tan10g0825 Cmetu02g2090 . Hepe05g1562 . Lcy11g1556 . . . . . . . . . . . . . . Cme06g00599 . . . Bda13g00114 . . . . . . Cmo14g01759 . . . . . . . . . . . . . Cla05g00532 Cam05g0583 Cec05g0593 Cco05g0591 Clacu05g0580 Cmu05g0550 Cre05g0619 . Csa03g01315 Chy06g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002132 1 3 1 1 1 2 2 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 2 2 2 2 2 5 6 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11057 PF03092 BT1 6.40E-61 CL0015 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01759 Cmo_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0