Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01773 ATGGACACTCCGGAGAGGAATCAGATCGGCACGACGGCGGCCCCTAAATTTGAGGATTCCCCAGTTTTCAACTACATCAATAATCTTTCTCCGATTCAACCTGTCAAGTCCATACATACTGCACAGACCTTCAACTCTCTTAGTTTTTCATCCCTTCCATCGGTTTTTACTTCGCCGCATACCAGTTCTTACAAGGAATCTAGATTCTTAAGAAGGCGCTGTTATTCAGATCTATCAAAACCAGACTTTTCTTCTGAAAATGGGAATAAAGGTGTTACAGGGAATGTGGATGAATTGCAGGTTAACTCTAGTGCACCAGATGACAAATCTGAATCATCTACCAAGCTGTCTTCTGAGCCACAAGCGTTGAAGAGCCATTCTTCTCGTCCAGATTGTGACCGACCGCTACCTGATAGTGACGACCGAGCTGTAAGTGACCCTTGTGTTGAAAATAACTCCGGAAGTGGATCATCTGAAGCTGAAGGGAATAGGCTGGTGGTCAGCCAAACTGAAGAAAAAGAGGGGACAAGTTATGACTGGGAAAGTTTAATTACTGAAGGCGCTGATATTTTGATATTCAGCTCCCCCAATGGCTCAGAGGCTATCAGACTTGTTCAGAAACCATCAAGCACCTTGGCTCAGATGATGGAAAATGACGATGCCAATCTGTCAAGAATGAGAATTGCTGATCCAATAGAATCTAGTGGTGGACAGCATGAAATAGAGTTTTCGTCGTCTCGAGCTGGAGAGGGTTGTGAACTAAAAGATATGGACCAGGCAATAGATGATGGCATTTCCTTTCCAATTTCAAGTGACTCTATGAGTAGGGAAATAACAGATGAAGAGGTGGCTAGATATATAGCAGATGATTGTATGCCGGTATCTAATTTGCATCGGGGTATGCGGAGGCGCTGTCTGGACTTCGAGGCTGTAGTCAGTCGAAGAAAAAACATGGAAGATGGTTCAAATGGTTGTTCTGTGTCGACGCATCCAGAAGAGAAGACGACATCCATGGATAAACAACTTGTTCCTTATAAATCTGGTGGTGTTGTTACTCGATACGTTTTAACTGGAATAGGCTTACACTTGAATGCTTTGGCAACAACTTCAAAGGATGCCAAAAATCTCAATCATGAAAGGTTCTCATCTGAGAGGCAACTGAACTTGCCTAATTCAGGTGGTTCGTGTCATTCGTCTTCAACTGGTCTGGATCCGCTCTCGACTTCGATTGTTACCGAACAAGACATGGATCCTTCAGGGAGTGGGGTTCAAAGTGAGGAAGATGCTGCTATGGCTTCTGCATATGTGCTTGCTGATGATTTCAATCAAAATAGTCCCAAAAGGAAGAGGCGTAGGTTGGAACACGCTGGAGAAACTGAGTTATCATGCAAACGCTGTAATTGTAAAAAGTCTAAGTGTTTAAAACTTTACTGTGAATGCTTTGCAGCAGGAGTTTACTGCATTGAGCCATGTTCATGTCAAGATTGCTTTAACAAACCTATTCATGAAGATACTGTTCTTGCAACTCGTAAGCAGATTGAATCTCGCAATCCGCTCGCATTTGCTCCCAAAGTGATCAGGAACTCGGATTCTCTTCCAGAACCCGGGGATGAATCTAACAAAACCCCAGCATCTGCACGCCATAAAAGAGGATGCAACTGCAAGAAGTCTAATTGCCTTAAGAGATATTGTGAATGCTATCAGGGTGGTGTTGGATGCTCCATCAGTTGCAGATGTGAGGGGTGTAAAAATGCATTTGGAAGAAAGGATGGGTCTTCTCTTTTGGGACTAGAAACTGAACTAGAAGAAGAAGAAACAGAAGCAAACCAAATGAGTGTAATGGACAAAGCCTTGCAAGGCCCTGAAATCCAGAACAATGAAGAGCAGAACCCAGGTTCTGCTATTCCCTCAACTCCATTACAACTTCCCAGGCAATTGGTTCCCCTGCCATTCTCTGCTAGGAGCAACCCACTGCGTTCTTCTTTTCTAAACGTCGGATCCTCATCAGGATTTTATGCTGGCTACAAACATGAAAAGCCAAACACTGCGCCCGTTTCGGACGATGCAATACCGAACATTCTTCGTGGCGATGGCTCTCCTGGTGCAGGCGTGAAGACTGATTCCCCCAACAGTATGAGGATATCTCCTCCTCAGAGTGACTTCGGCCTATCGCCATTGCCACGAACAGGTCGGAAACTGATATTGCAGTCTATTCCATCTTTCCCTTCTCTCACCCCTCAACACTGA 2247 44.5 MDTPERNQIGTTAAPKFEDSPVFNYINNLSPIQPVKSIHTAQTFNSLSFSSLPSVFTSPHTSSYKESRFLRRRCYSDLSKPDFSSENGNKGVTGNVDELQVNSSAPDDKSESSTKLSSEPQALKSHSSRPDCDRPLPDSDDRAVSDPCVENNSGSGSSEAEGNRLVVSQTEEKEGTSYDWESLITEGADILIFSSPNGSEAIRLVQKPSSTLAQMMENDDANLSRMRIADPIESSGGQHEIEFSSSRAGEGCELKDMDQAIDDGISFPISSDSMSREITDEEVARYIADDCMPVSNLHRGMRRRCLDFEAVVSRRKNMEDGSNGCSVSTHPEEKTTSMDKQLVPYKSGGVVTRYVLTGIGLHLNALATTSKDAKNLNHERFSSERQLNLPNSGGSCHSSSTGLDPLSTSIVTEQDMDPSGSGVQSEEDAAMASAYVLADDFNQNSPKRKRRRLEHAGETELSCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRNSDSLPEPGDESNKTPASARHKRGCNCKKSNCLKRYCECYQGGVGCSISCRCEGCKNAFGRKDGSSLLGLETELEEEETEANQMSVMDKALQGPEIQNNEEQNPGSAIPSTPLQLPRQLVPLPFSARSNPLRSSFLNVGSSSGFYAGYKHEKPNTAPVSDDAIPNILRGDGSPGAGVKTDSPNSMRISPPQSDFGLSPLPRTGRKLILQSIPSFPSLTPQH 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13699108 13702937 + CmoCh14G017730.1 Cmo14g01773 397039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01773 748 MobiDBLite consensus disorder prediction 524 551 - -
Cmo14g01773 748 MobiDBLite consensus disorder prediction 146 173 - -
Cmo14g01773 748 ProSiteProfiles CRC domain profile. 462 587 IPR005172 -
Cmo14g01773 748 MobiDBLite consensus disorder prediction 319 341 - -
Cmo14g01773 748 MobiDBLite consensus disorder prediction 704 718 - -
Cmo14g01773 748 MobiDBLite consensus disorder prediction 681 728 - -
Cmo14g01773 748 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 748 IPR044522 GO:0003700
Cmo14g01773 748 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 550 585 IPR005172 -
Cmo14g01773 748 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 464 499 IPR005172 -
Cmo14g01773 748 MobiDBLite consensus disorder prediction 80 178 - -
Cmo14g01773 748 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 748 - -
Cmo14g01773 748 Coils Coil 594 614 - -
Cmo14g01773 748 MobiDBLite consensus disorder prediction 80 125 - -
Cmo14g01773 748 MobiDBLite consensus disorder prediction 126 145 - -
Cmo14g01773 748 SMART CXC_2 547 588 IPR033467 -
Cmo14g01773 748 SMART CXC_2 461 502 IPR033467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01773 - - - csv:101203694 1198.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01394 Cmo14g01773 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01773 Cmo-Chr14:13699108 Cmo11g00626 Cmo-Chr11:2988636 5.98E-08 dispersed
Cmo14g01773 Cmo-Chr14:13699108 Cmo17g00212 Cmo-Chr17:1245799 1.39E-13 wgd
Cmo14g01773 Cmo-Chr14:13699108 Cmo06g01394 Cmo-Chr6:10217110 0 wgd
Cmo14g01773 Cmo-Chr14:13699108 Cmo08g01108 Cmo-Chr8:7086479 2.47E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g539 . Blo12g00335 Bda03g00875 . . Bpe14g01204 Bma04g00774 . . . Cma06g01388 Cma14g01734 Car06g01197 Car14g01564 Sed02g1334 Cpe08g00275 Cpe03g01455 Bhi01g00774 Tan10g0801 Cmetu07g2311 . Hepe05g1577 . Lcy11g1571 . . . . . . . . Cone15ag0860 Cone7ag0270 Cone4ag0261 Lsi05g01627 . . Cme06g00586 Blo02g00527 Blo07g00229 Bda11g00591 Bda13g00106 . Bpe13g00593 . Bma06g01566 . Cmo06g01394 Cmo14g01773 . . . . . Cpe17g00155 . . . . . . . Cla05g00518 Cam05g0569 Cec05g0581 Cco05g0579 Clacu05g0566 Cmu05g0537 Cre05g0606 . Csa03g01301 Chy06g00555 Cme05g00473
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003693 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 7 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11059 PF03638 TCR 1.70E-11 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01773 Cmo_Chr14 FPKM 31.555969 35.15593 11.866674 10.912601 5.16038 5.023661 4.899922 2.66681 3.008363 3.032617