Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01776 ATGTACTACAACAAACGTCCAGAGCTTATAAAAGTAGTTGAGGAGTTCTACCGAGCGTACCGTGCTTTAGCTGAACGATATGACCCTGCAACTGCAGAGCTTCAAGATGCACATGAAACCATGCCTCAAGCATTAGACAACCAAATGCCTCCTGATGATGAGTCTTGTTCTGATGCTGAATCCCACACACCAGAAATCCACCTCCCAAATCATGCACTGCATGACAAAGGTGACTTGCACAAGGAGTTGGGGAGTTCATCATCAACGAATCAAAGCGGTTCTGCAAGTAAAGCGGGTTTGAAACAGCTCAATGAGATGTTTGCATCAGAGGGAAGCACTGAACTGCAAGTAGTTCGTCGTGAAGGTGAATTCGATGGCCATAACTTGCATAGAGTGCCCTTTCAGTTAATTAGGAACATTTGTGTTCTCAAACCTCCAATTCTGTGGTTGTCTGAAAGAGACGAAAAATTGGATTCTGAACTTCAAAGTTTAAGAAAGAGACTGAATGAGATGGAATCTGAAAAGGAAGCTTTCTTTGTTAAATACCAGAATTCTTTGGAAAAGCTATCCAGCCTAGAGAAAGAACTTAGTTCTACTCAAAAAGATGCCAGTGGACTCGACGAACGAGCGAGCAAAGCTGAAATCGAAATAAAAATATTGAAGGAAGCCCTTCAAGATTTGAAAGCAGAGAAGAATGCAGGCCTTCTACAATATAATCAATGTTTGCAAAACATATCTAGCCTAGAAAAGCTATTTTCTGACTCCCAACAAGATGCTGAAGGACATAAAGAGAGAACCGCTAAGGCCGAAATTGAAGCCCACAACCTTGAGCAACAACTTTCCAGATTAGCAGCTGAAAAGGAGGTCAGTCTTGTTCAGTATGAGCAATGCCTAAAGAAGATATCTGCTTTAGAGAATAAAATCTCTGTTTCTGAAGATTATGCAAGAACGCTCGATGAACGAATGAATCGTTCAGAGACTGAAGTGAAAGTACTGAAGAGAGCTCTCGACGCTCTGAATGAAGAGAAGGAAATAGCATCTCGCCAGTATGAGCAGTGCTTGGAGAAAATTGCCAAGATGGAAACTGAAATATCTCATGCTCAAGATGAACTTGTGATAGCTAATGCAAAACTGGAGACAACAGAAGAAAGGTGTGCTCATTTGGAGCAGTCAAACCATTCACTGCAGTTTGAAGCAGACAACCTTGTACACAAGATTGTTATTAAGGATCGAGAGCTTGCAGAAACGCGAGATGAGCTGAAGAAACTGCAGACTCTAATGAATGAACTGACTTTTTCTTCCAATACTATAATGAAGAATTTGGAGGATCAATTATCTGGCTTGATGGAGATGAAAGAGAAGCTTGAAGAGGTTGTTTCTAAAAAAGAAGAGCAGAGAAAGTTGCTCGAGAAAGAGATCGATCATTTGAGAGACGAAATTAACGAATCGAGTGTAAGATACCAGCGCATAATGAGACAATTGGAAGAGGAATTTGAAGAGGAGAATGCCAAGCTGAGGGAGGCCTGTGAAAAGAACAGGAACGAGATAGAAGCACTTCACGAAAAACTCAGTTATATGGATAAACTTGAAAAGGAAAATTTGTCTTTCCTTATTGAATGTGAACAATATGAAGAGGCATCCAAGTTATCAGATAAAGTTATTGCTGAATTGGAAGGCGAAAATATGGAGCAACAAGTTGAAGTAGAATTTATGTACAATGAAATCAATAAATTAAGAGGAGGAATCCGTAAGGTTTTAATGGCTCTTCAAATTGACCAAGTTGAAGAGAGGATTCTGATAGTGGATATTTTGGCCAGAATTGAGGATTTGAAAACGTCCGTGTTCAAAAACAAGGACGAGAAGCGGCAACTGCTCGTTCAGAACTCGGTTTTATTGACTCTTCTCAAGCAACTGAGTTTCGAGAGTGAAGAACTGAAAGAAAACTTTATGCAGGATCAACTAGCAATGCATGAACAAGACAAGCAGAATTTAATCATTCAGGAAACAATTGCTTTCAACATCCTATCGTCGATTTTCGAAAGCTTCAAAACAGAGAAATTCTTGGAAATCGAAAGGCTTGTTCAAGATATCTGTCATCTCCAAGTGGTTAATTCTGAGACAAGGGAAGAAGTTGTGAAGTTGGCAGAGAAATCTCAGTCGAAGGACGTTGAAAATTTGCGTTTAAACGGATCGGTAGAGAAATTGGCAAAGGAGCTACATGAAACAAAAGCTTCGAATGATGAACTCAACCATCAAATTTTACTTGGAAATGATTTACTGAGGTCGGAGGCCCGAAAGCTGTCTGAAACAGAGGAGGAGCTTAAAAATTCACAAAACTTCAACATGAAACTGTGTGATACTGTTGAGGAGCTCAAGATGGAAGGTGAAGAAACAATGATGATCAAACAGAATCTAGAGAATGAGAATCTTGAACTTAAAGAAAAGTGCTTAAGCCAGGAGAATCAGATTCAACGCCTCAGTGAAGTAAATGAAAATTTGAAATCTGAAGTTGATTTATTGAATGAGGAGATGGAGAAATGCAAGATTAGAGAGGAGTGTCTGAGTCTAGAGCTACAGGAGAGAAGAGATGAGTTTGAGCTCTGGGAAGCTGAAGCCACGGCATTTTACTTCGATAATCAAATCTCATCGATACGGGAGGTTTTATACGAGAATAAGGTACACGAACTTGTCCATGCTTGTGAAAATGCTCGGGATGAGGAGGCTGAAAAAGATATGGAGATCGAAAAACTCAGAGAAAGAGTAAGTTTCCTGGAAATTGAAGTCGGAGAAATGGAGGCACAGTTGTGTGCATATAAGCCAGCCATAGCTGCTCTGAGGGAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAGGGCGAGGAAACCACAGCTCATGTTCATCAGAGGAGCTGTAATGTCTACAAAGATGAGATATTGGATTTGCAGGAGATTGGGGCCATGATAAAAGTAGTGGAGAAGGCTGTGATCGAGGAAAAGAAAAAACTTAACAAAGAAGCTGCTGAAGTACATGTCGAAGGAACATCGCATCGAGAAGCGACAACGGAGGATGGAATTACTGATAATCCTAAGGCAAGAAAGAACAAACCTGAGAATGAAATGGTAATGAAAGATATTCCACTGGATCGTGAATCAGATAGTTCTTTCCAGAGAAGAAGCAGAAGGGAAAGTAGTGAGACCAATGAGCAAATGCTTAAGTTGTGGGAAATTGCTGCGCAGAATTGTGACCAGAATTTGATTGATAGCTCGCCACAAAGCCCCTCAGACCCACAAGTTGAGTACCCACAGTTGGAGCAATCCCCCAGCAGCAGCAGCATTAGAGAACGAATCCGAAGAGGCCGAAAAGGAAAGATCTTAGAGAGAATTGATTCATATGTCGATCAGTTGACAGGTCTTCTAACAAGTGTTAGAGATTTGAAAAAGAGAATTGAAGTGAACATCTTCGAAATGACTCCAAACAATGAATACGACACGGTTGAGAAACACATAAAAGAAGTCGAGGAAGATATATTTCAGCAAATGAATATCAATGATCAACTGAAGCAGAATTTGGAACGCAGTCCCTCGTTTTTCGAGCAAATGCCATCAATAGAAATCGAGGCGACTGGAAACATCCCCTTAAGCAAACTAAGAGAGCAGGCACGAAGAGGATCTGTAAAGATACAACAACTACAGTTCGAGGTACAGAGCATTCAGCGCGTTGTGCTGAAACTCGAAGCCGAGAAGAAACCAAAAGGGAAGAACACATTACCGGGGAGTAGTAAACCTCGGGTTATTCTGAGAGATTTCATCTGCAGAAGCGGAAAACGGAGGGAAAGATGGAAGAAACCATGTTCTTGTGGATAA 3867 40.78 MYYNKRPELIKVVEEFYRAYRALAERYDPATAELQDAHETMPQALDNQMPPDDESCSDAESHTPEIHLPNHALHDKGDLHKELGSSSSTNQSGSASKAGLKQLNEMFASEGSTELQVVRREGEFDGHNLHRVPFQLIRNICVLKPPILWLSERDEKLDSELQSLRKRLNEMESEKEAFFVKYQNSLEKLSSLEKELSSTQKDASGLDERASKAEIEIKILKEALQDLKAEKNAGLLQYNQCLQNISSLEKLFSDSQQDAEGHKERTAKAEIEAHNLEQQLSRLAAEKEVSLVQYEQCLKKISALENKISVSEDYARTLDERMNRSETEVKVLKRALDALNEEKEIASRQYEQCLEKIAKMETEISHAQDELVIANAKLETTEERCAHLEQSNHSLQFEADNLVHKIVIKDRELAETRDELKKLQTLMNELTFSSNTIMKNLEDQLSGLMEMKEKLEEVVSKKEEQRKLLEKEIDHLRDEINESSVRYQRIMRQLEEEFEEENAKLREACEKNRNEIEALHEKLSYMDKLEKENLSFLIECEQYEEASKLSDKVIAELEGENMEQQVEVEFMYNEINKLRGGIRKVLMALQIDQVEERILIVDILARIEDLKTSVFKNKDEKRQLLVQNSVLLTLLKQLSFESEELKENFMQDQLAMHEQDKQNLIIQETIAFNILSSIFESFKTEKFLEIERLVQDICHLQVVNSETREEVVKLAEKSQSKDVENLRLNGSVEKLAKELHETKASNDELNHQILLGNDLLRSEARKLSETEEELKNSQNFNMKLCDTVEELKMEGEETMMIKQNLENENLELKEKCLSQENQIQRLSEVNENLKSEVDLLNEEMEKCKIREECLSLELQERRDEFELWEAEATAFYFDNQISSIREVLYENKVHELVHACENARDEEAEKDMEIEKLRERVSFLEIEVGEMEAQLCAYKPAIAALREDVESLKHIVLPQGEETTAHVHQRSCNVYKDEILDLQEIGAMIKVVEKAVIEEKKKLNKEAAEVHVEGTSHREATTEDGITDNPKARKNKPENEMVMKDIPLDRESDSSFQRRSRRESSETNEQMLKLWEIAAQNCDQNLIDSSPQSPSDPQVEYPQLEQSPSSSSIRERIRRGRKGKILERIDSYVDQLTGLLTSVRDLKKRIEVNIFEMTPNNEYDTVEKHIKEVEEDIFQQMNINDQLKQNLERSPSFFEQMPSIEIEATGNIPLSKLREQARRGSVKIQQLQFEVQSIQRVVLKLEAEKKPKGKNTLPGSSKPRVILRDFICRSGKRRERWKKPCSCG 1288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13706983 13711377 + CmoCh14G017760.1 Cmo14g01776 397042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01776 1288 Coils Coil 900 934 - -
Cmo14g01776 1288 Coils Coil 406 433 - -
Cmo14g01776 1288 MobiDBLite consensus disorder prediction 1085 1111 - -
Cmo14g01776 1288 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 427 533 - -
Cmo14g01776 1288 Coils Coil 732 752 - -
Cmo14g01776 1288 Coils Coil 259 286 - -
Cmo14g01776 1288 Coils Coil 554 574 - -
Cmo14g01776 1288 MobiDBLite consensus disorder prediction 1008 1068 - -
Cmo14g01776 1288 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 1 34 IPR011684 GO:0003779
Cmo14g01776 1288 MobiDBLite consensus disorder prediction 1085 1118 - -
Cmo14g01776 1288 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 652 1288 - -
Cmo14g01776 1288 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 529 664 - -
Cmo14g01776 1288 Coils Coil 757 777 - -
Cmo14g01776 1288 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 429 - -
Cmo14g01776 1288 SUPERFAMILY Tropomyosin 220 494 - -
Cmo14g01776 1288 Coils Coil 1228 1248 - -
Cmo14g01776 1288 Coils Coil 1170 1190 - -
Cmo14g01776 1288 Coils Coil 438 522 - -
Cmo14g01776 1288 PANTHER PROTEIN NETWORKED 4A 529 664 - -
Cmo14g01776 1288 PANTHER PROTEIN NETWORKED 4A 427 533 - -
Cmo14g01776 1288 Coils Coil 788 850 - -
Cmo14g01776 1288 Coils Coil 154 230 - -
Cmo14g01776 1288 Coils Coil 315 398 - -
Cmo14g01776 1288 Pfam KIP1-like protein 1 28 IPR011684 GO:0003779
Cmo14g01776 1288 Gene3D - 353 543 - -
Cmo14g01776 1288 Coils Coil 526 546 - -
Cmo14g01776 1288 MobiDBLite consensus disorder prediction 83 97 - -
Cmo14g01776 1288 PANTHER PROTEIN NETWORKED 4A 1 429 - -
Cmo14g01776 1288 PANTHER PROTEIN NETWORKED 4A 652 1288 - -
Cmo14g01776 1288 MobiDBLite consensus disorder prediction 55 82 - -
Cmo14g01776 1288 MobiDBLite consensus disorder prediction 43 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01776 - - - cpep:111790467 2221.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01392 Cmo14g01776 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01776 Cmo-Chr14:13706983 Cmo04g00921 Cmo-Chr4:4630626 7.08E-11 dispersed
Cmo14g01776 Cmo-Chr14:13706983 Cmo17g01177 Cmo-Chr17:9471163 9.68E-50 wgd
Cmo14g01776 Cmo-Chr14:13706983 Cmo19g00024 Cmo-Chr19:146320 5.81E-27 wgd
Cmo14g01776 Cmo-Chr14:13706983 Cmo02g01834 Cmo-Chr2:10393658 3.41E-101 wgd
Cmo14g01776 Cmo-Chr14:13706983 Cmo06g01392 Cmo-Chr6:10205433 0 wgd
Cmo14g01776 Cmo-Chr14:13706983 Cmo08g00322 Cmo-Chr8:2004253 3.12E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01776 Cmo_Chr14 FPKM 6.990584 4.722394 3.712844 2.588589 7.109555 6.31703 7.61829 3.053919 1.799618 2.500597