Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo14g01778 | ATGAAAACCTCAAACTTCCCTCTCCCAAAATCTCTCCTCCTCATATCCATCCTCGCCCTCCTCTCCAACCCTTCATATCAAGCGACTCCCCGGCCGCCATCGCCGCCCCCGCCGCCATTTCTCCCCAACCCGAGGCTTCTCAAGGCTTACACTGCTCTCCAAGCTTGGAAACATGCCATCACTGCCGACCCAAACAACTTCACCGCTGACTGGTACGGCCCCAACGTATGCAACTACTCCGGCATTTTCTGTGCCCCCGCTCCCGACGACCCCTATATCCTCACCGTCGCCGGGATCGACCTCAACCATGCCAACCTGTCGGGCACCCTACCCGACGACCTCGGCCTCCTGACCGACCTTGCTCTGTTCCACATCAACTCCAATCGCTTCTGCGGTACTGTCCCCGAGTCCTTCCAGTGCCTCACTCGCCTATTCGAGCTCGATCTCAGCAACAATGGCTTCTCCGGCGAATTCCCTTCTGCAATTCTCTCTCTTGCTGCTCTCAAATTCCTCGATATTCGATTCAACAAATTCCATGGGGATCTCCCTTCTCCCCTGTTTGACATGAAACTCGATGCTCTGTTCGTCAATAATAACGATTTCAAATTCTCCTTACCGGAAAACATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGCCTCCCCTCCAGTTTATCCAACATGAACAATACACTCAATGAAATTATAATCACGAATAGTGGGTTGAATGGGTGTTTGCCGCCGGAAATTGGGTCGTTGAGCAATCTCGCCGTCTTCGATGTCAGTGACAACAATCTTGTCGGACCACTGCCGGAGACGATGGCCGGAATGAAGAAATTGGAGCAGCTAAATGTCGCACATAACCAATTATCCGGTGAAATTCCGGCAAGTATTTGCTCGTTGCCAAAATTGCAGAATTTCACGTACTCGTATAATTTCTTCTGCAGTGAGCCGTCAGTGTGCCTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGAAAGGCCACTGCAACGTTCGCCGGAGGAATGTAAAGCTTTCTACTCTTACTCTGTTGACTGCGGCGTCTTCAGTTTGATTAGTGATGTGATCTGTGTGTAA | 1128 | 50.44 | MKTSNFPLPKSLLLISILALLSNPSYQATPRPPSPPPPPFLPNPRLLKAYTALQAWKHAITADPNNFTADWYGPNVCNYSGIFCAPAPDDPYILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTVPESFQCLTRLFELDLSNNGFSGEFPSAILSLAALKFLDIRFNKFHGDLPSPLFDMKLDALFVNNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLNEIIITNSGLNGCLPPEIGSLSNLAVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPSVCLKLQASDDQKNCLPERPLQRSPEECKAFYSYSVDCGVFSLISDVICV | 375 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 13715371 | 13717483 | - | CmoCh14G017780.1 | Cmo14g01778 | 397044 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo14g01778 | 375 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 35 | 367 | - | - | |
| Cmo14g01778 | 375 | Gene3D | Ribonuclease Inhibitor | 211 | 335 | IPR032675 | - | |
| Cmo14g01778 | 375 | SUPERFAMILY | L domain-like | 49 | 330 | - | - | |
| Cmo14g01778 | 375 | Pfam | Leucine rich repeat N-terminal domain | 51 | 84 | IPR013210 | - | |
| Cmo14g01778 | 375 | Pfam | Leucine rich repeat | 239 | 297 | IPR001611 | GO:0005515 | |
| Cmo14g01778 | 375 | Gene3D | Ribonuclease Inhibitor | 48 | 210 | IPR032675 | - | |
| Cmo14g01778 | 375 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 | 35 | 367 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo06g01390 | Cmo14g01778 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo10g00642 | Cmo-Chr10:2945225 | Cmo14g01778 | Cmo-Chr14:13715371 | 2.02E-139 | dispersed | |
| Cmo11g00596 | Cmo-Chr11:2873279 | Cmo14g01778 | Cmo-Chr14:13715371 | 4.66E-141 | dispersed | |
| Cmo11g01999 | Cmo-Chr11:13687292 | Cmo14g01778 | Cmo-Chr14:13715371 | 3.30E-124 | dispersed | |
| Cmo12g01271 | Cmo-Chr12:11268328 | Cmo14g01778 | Cmo-Chr14:13715371 | 3.02E-139 | dispersed | |
| Cmo14g01778 | Cmo-Chr14:13715371 | Cmo17g00425 | Cmo-Chr17:2835184 | 5.36E-104 | dispersed | |
| Cmo14g01778 | Cmo-Chr14:13715371 | Cmo06g01390 | Cmo-Chr6:10200801 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo14g01778 | - | - | cmos:111457817 | 709.138 |