Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01778 ATGAAAACCTCAAACTTCCCTCTCCCAAAATCTCTCCTCCTCATATCCATCCTCGCCCTCCTCTCCAACCCTTCATATCAAGCGACTCCCCGGCCGCCATCGCCGCCCCCGCCGCCATTTCTCCCCAACCCGAGGCTTCTCAAGGCTTACACTGCTCTCCAAGCTTGGAAACATGCCATCACTGCCGACCCAAACAACTTCACCGCTGACTGGTACGGCCCCAACGTATGCAACTACTCCGGCATTTTCTGTGCCCCCGCTCCCGACGACCCCTATATCCTCACCGTCGCCGGGATCGACCTCAACCATGCCAACCTGTCGGGCACCCTACCCGACGACCTCGGCCTCCTGACCGACCTTGCTCTGTTCCACATCAACTCCAATCGCTTCTGCGGTACTGTCCCCGAGTCCTTCCAGTGCCTCACTCGCCTATTCGAGCTCGATCTCAGCAACAATGGCTTCTCCGGCGAATTCCCTTCTGCAATTCTCTCTCTTGCTGCTCTCAAATTCCTCGATATTCGATTCAACAAATTCCATGGGGATCTCCCTTCTCCCCTGTTTGACATGAAACTCGATGCTCTGTTCGTCAATAATAACGATTTCAAATTCTCCTTACCGGAAAACATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGCCTCCCCTCCAGTTTATCCAACATGAACAATACACTCAATGAAATTATAATCACGAATAGTGGGTTGAATGGGTGTTTGCCGCCGGAAATTGGGTCGTTGAGCAATCTCGCCGTCTTCGATGTCAGTGACAACAATCTTGTCGGACCACTGCCGGAGACGATGGCCGGAATGAAGAAATTGGAGCAGCTAAATGTCGCACATAACCAATTATCCGGTGAAATTCCGGCAAGTATTTGCTCGTTGCCAAAATTGCAGAATTTCACGTACTCGTATAATTTCTTCTGCAGTGAGCCGTCAGTGTGCCTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGAAAGGCCACTGCAACGTTCGCCGGAGGAATGTAAAGCTTTCTACTCTTACTCTGTTGACTGCGGCGTCTTCAGTTTGATTAGTGATGTGATCTGTGTGTAA 1128 50.44 MKTSNFPLPKSLLLISILALLSNPSYQATPRPPSPPPPPFLPNPRLLKAYTALQAWKHAITADPNNFTADWYGPNVCNYSGIFCAPAPDDPYILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTVPESFQCLTRLFELDLSNNGFSGEFPSAILSLAALKFLDIRFNKFHGDLPSPLFDMKLDALFVNNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLNEIIITNSGLNGCLPPEIGSLSNLAVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPSVCLKLQASDDQKNCLPERPLQRSPEECKAFYSYSVDCGVFSLISDVICV 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13715371 13717483 - CmoCh14G017780.1 Cmo14g01778 397044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01778 375 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 35 367 - -
Cmo14g01778 375 Gene3D Ribonuclease Inhibitor 211 335 IPR032675 -
Cmo14g01778 375 SUPERFAMILY L domain-like 49 330 - -
Cmo14g01778 375 Pfam Leucine rich repeat N-terminal domain 51 84 IPR013210 -
Cmo14g01778 375 Pfam Leucine rich repeat 239 297 IPR001611 GO:0005515
Cmo14g01778 375 Gene3D Ribonuclease Inhibitor 48 210 IPR032675 -
Cmo14g01778 375 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 35 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01778 - - - cmos:111457817 709.138
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01390 Cmo14g01778 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00642 Cmo-Chr10:2945225 Cmo14g01778 Cmo-Chr14:13715371 2.02E-139 dispersed
Cmo11g00596 Cmo-Chr11:2873279 Cmo14g01778 Cmo-Chr14:13715371 4.66E-141 dispersed
Cmo11g01999 Cmo-Chr11:13687292 Cmo14g01778 Cmo-Chr14:13715371 3.30E-124 dispersed
Cmo12g01271 Cmo-Chr12:11268328 Cmo14g01778 Cmo-Chr14:13715371 3.02E-139 dispersed
Cmo14g01778 Cmo-Chr14:13715371 Cmo17g00425 Cmo-Chr17:2835184 5.36E-104 dispersed
Cmo14g01778 Cmo-Chr14:13715371 Cmo06g01390 Cmo-Chr6:10200801 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g543 . . . . . . . . . . Cma06g01378 Cma14g01740 Car06g01193 Car14g01568 Sed02g1338 Cpe08g00278 Cpe03g01458 Bhi01g00768 Tan10g0798 Cmetu11g1491 . . . Lcy11g1575 . . . . . . . . . . Cone4ag0264 Lsi05g01631 . . Cme06g00581 . . Bda11g00593 . . . . . . Cmo06g01390 Cmo14g01778 . . . . . . . . . . . . . Cla05g00515 Cam05g0566 Cec05g0578 Cco05g0576 Clacu05g0563 Cmu05g0534 Cre05g0603 . Csa03g01297 Chy06g00552 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo01g01932 . 61 291 Leucine-rich Repeat extension Gene Families AT1G62440 67.1 5.6e-53 206.8
Cmo14g01778 CST 43 271 Leucine-rich Repeat extension Gene Families AT1G62440 65.1 5.5e-48 190.3
Cmo08g00870 . 36 260 Leucine-rich Repeat extension Gene Families AT1G62440 57.5 4.8e-44 177.2
Cmo12g01271 CCT 93 444 Leucine-rich Repeat extension Gene Families AT1G62440 61.9 5.3e-43 173.7
Cmo11g00596 . 53 225 Leucine-rich Repeat extension Gene Families AT1G62440 67.1 2.9e-41 167.9
Cmo10g00642 CCT 61 230 Leucine-rich Repeat extension Gene Families AT1G62440 68.2 5.5e-40 163.7
Cmo17g00425 . 42 225 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 1.5e-37 155.6
Cmo11g00596 . 26 397 Leucine-rich Repeat extension Gene Families AT4G13340 75.1 5.6e-66 250.0
Cmo12g01271 CCT 38 444 Leucine-rich Repeat extension Gene Families AT4G13340 71.6 2.1e-65 248.1
Cmo10g00642 CCT 14 412 Leucine-rich Repeat extension Gene Families AT4G13340 70.3 1.6e-60 231.9
Cmo14g01778 CST 43 367 Leucine-rich Repeat extension Gene Families AT4G13340 71.2 1.9e-53 208.4
Cmo01g01932 . 17 262 Leucine-rich Repeat extension Gene Families AT4G13340 58.5 3.3e-50 197.6
Cmo08g00870 . 26 260 Leucine-rich Repeat extension Gene Families AT4G13340 63.0 1.1e-48 192.6
Cmo08g00869 . 26 150 Leucine-rich Repeat extension Gene Families AT4G13340 58.4 4.2e-37 154.1
Cmo06g01390 CST 14 367 Leucine-rich Repeat extension Gene Families AT4G13340 59.7 2.1e-36 151.8
Cmo11g00596 . 28 400 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 1.3e-71 268.1
Cmo12g01271 CCT 68 440 Leucine-rich Repeat extension Gene Families AT3G24480 74.4 1.3e-71 268.1
Cmo10g00642 CCT 27 414 Leucine-rich Repeat extension Gene Families AT3G24480 69.9 9.6e-67 251.9
Cmo01g01932 . 25 262 Leucine-rich Repeat extension Gene Families AT3G24480 60.7 6.0e-53 206.1
Cmo14g01778 CST 43 366 Leucine-rich Repeat extension Gene Families AT3G24480 67.4 3.0e-52 203.8
Cmo08g00870 . 17 260 Leucine-rich Repeat extension Gene Families AT3G24480 57.8 1.6e-50 198.0
Cmo17g00425 . 30 225 Leucine-rich Repeat extension Gene Families AT3G24480 64.0 1.4e-41 168.3
Cmo08g00869 . 17 150 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 5.5e-38 156.4
Cmo06g01390 CST 28 367 Leucine-rich Repeat extension Gene Families AT3G24480 58.1 3.9e-36 150.2
Cmo14g01778 CST 15 366 Leucine-rich Repeat extension Gene Families AT3G22800 68.8 2.4e-67 253.8
Cmo06g01390 CST 7 364 Leucine-rich Repeat extension Gene Families AT3G22800 61.6 1.0e-49 195.3
Cmo11g01999 . 56 388 Leucine-rich Repeat extension Gene Families AT3G22800 59.9 1.1e-40 165.2
Cmo11g00596 . 65 393 Leucine-rich Repeat extension Gene Families AT3G22800 61.9 5.2e-38 156.4
Cmo01g01932 . 63 291 Leucine-rich Repeat extension Gene Families AT3G22800 53.9 2.0e-37 154.5
Cmo12g01271 CCT 79 438 Leucine-rich Repeat extension Gene Families AT5G25550 62.7 3.3e-39 160.2
Cmo10g00642 CCT 47 227 Leucine-rich Repeat extension Gene Families AT5G25550 71.8 1.7e-38 157.9
Cmo11g00596 . 39 219 Leucine-rich Repeat extension Gene Families AT5G25550 71.3 2.2e-38 157.5
Cmo06g01390 CST 27 360 Leucine-rich Repeat extension Gene Families AT5G25550 65.6 1.8e-37 154.5
Cmo01g01932 . 31 291 Leucine-rich Repeat extension Gene Families AT5G25550 53.6 7.0e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01778 Cmo_Chr14 FPKM 4.921934 5.054707 9.512339 10.140847 33.93951 32.343994 33.952118 12.644134 13.523153 11.691314