Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01779 ATGGGTAAGGCCGGAAAATGGCTCAAGAATTTCCTCTCCGGCAAGAAGTTCGACAAGGAACATTACCAAATCGCCAATCATGTTTCTGTTGTTTCCTCTGGAAATTCAACGATTCCGGTTTCGTCTCCCAAAGAGAAGAAGCGATGGAGTTTCCGGCGACCCTCACCGGCAAAGGAGGTGAACACGCCGGGATCGAATGTCGCCGTCGCTGTCAACCCATCTGTGAATACCACGTTTGATATGGAGAAGGAACAGGAAAAACACGCTATGGCGATGGCTGCTGCGACGGAGGCGGCAGTCGCTGCTGCACAAGCCGCCGCCGTCGTGATTCGTTTGACTGTAGCGTCGAATGGGAAAGATAGTAGAATTGAAGAAGCTGCTGCGATTAAAATCCAATCCGTTTTCAGATCTTATCTGGCGAGAAAGGCGCTGTGTGCTTTGAAAGGGTTAGTGAAATTGCAGGCGATGGTGAGAGGCCATTTGGTGAGGCGAAGAGCCACCGAAACTCTGCGGTGTATGCAAGCTTTAGTGACGGCGCAGGCCAGAGCACGAACACAGAGGATCAAAATGGCGGAAGATTCACAGCCCACTGCCCATTCATGGCACTCATCCCATCGAAAATCTTTCCAAGAAAGCCGTCAAAGACACACCCATCAAGAGATTGACAGAGAAATGGAAGAGAACATAAAGATCGTGGAGATGGATTTAGGTGGAAGTCTAAAGAATCGCAATAGCTACAGCCATAATACCTATTCGAATCAAGAAAACTACCGTCTCTCGCCGGCGCCGTCAGCGATGACCGACATGAGCCCGAGAACATTCAGCGGCCATTTCGAAGATTACGCCTACGGAACAGCTCAAAGTAGTCCCCAATGCTTCTCCGCCATGGCGAAATCCGACCCAAATCGCATCCCATTCGAATTTCCCAGATCCGAATATGCAGAATCTTTGTCTTACGATTACCCATTGTTCCCAAATTACATGGCGAACACCGAATCGTCGAAGGCGAAAGTGCGGTCGCAGAGCGCACCAAAGGCTAGGCCAGAGTCGCTTGAGAGACAGCCGAGCCGAAGGCGGGCGTCAGTGGAGGGGAGGAACATTCCAAGGGCGGTGAGAATGCAGCGGTCGTCGTCACATTTGGGGTCCGCCGCGAAGAACTACGGGTATCCTCCATGGGCGGTGAAGCTGGACCGGTCGTCAGTATCGCTGAAGGACAGCGAATGTGGGTCGACGTGCTCGGTGCTGACAAATCTGAACTATTGTCGATCGGTGGCATCGCAGGAAGTGATTGGAATTATGGGTAATGAAGAGATTGAGAGCCCTCACCGTGTGGCCATTCCTCCGACCAAGCCGTTCTTGGTGTCCTTAGGCGCCAATCTCAAAGAGACCTTCTTCCCCGATGACCCTTTCAAACAGTTCAAAAACCAGCCCATAGGAGCCCAGATTCTTCTCTGGCTTAAATACTTTATCCCCTTCCTCGAATGGGCTCCTCGCTACACCTTCAATTTCTTTAAAGCCGACCTCGTTGCCGGCATCACCATCGCCAGTTTGGCCGTCCCTCAGGGCATCAGCTATGCCAATCTTGCCACCATCCCCCCCATCATTGGCCTTTGTAAATTCCAGCTTTGTGCCGCCATTGATATACGCCATGCTTGGAAGCTCCAAAGATTTGGCGGTGGGGACTGTGGCGGTGGTGTCGCTTCTCATGTCCGCCCTATTGGGGAAGGAAGTCAGCCCGGTGGAGCATCCCAAGGAATATGTGCAATTGCGATTGTGGGGTTCATGGGTGGTGCGGCGACGGTGGTTTGTCTTCAGCAGCTAAAAGGCATAATGGGATTGGTTCATTTCACGCATGAGACTGATGTTGTATCCGTCACGCGCTCTCTTTTCTCCCAAATTCATCAGTGGAGATGGCAAAGTGTAGTGTTGGGTTGCAGTTTTCTCTCCTTTCTCCTCCTCACCAGATACTTGAGCAAGAAGAAACCAATCTTCTTTTGGATAAATGCATTGGCGCCTTTGCTTTCCATCATCTTGGGAAGTCTTCTCGTCTACTTCACCCACGCTGAACGCCATGGAGTTCAAGTGATTGGGATTTTGAAGAAAGGGTTGAATCCCTTATCTGTATCTGATTTAGTATTTGGGCGCCCTCATCTTCCCATTGCCATCAAAACAGGGATCATCATCGGAATCATAGGCCTCGCTGAAGGAGTTGCCGTGGGGAGAAGTTTTGCTACACTTAAGAACTACCACATTGATGGAAACAAGGAGATGATTGCATTTGGGTTGATGAACATTGTTGGTTCTTGCACTTCTTGCTACCTTACTGCAGGGCCATTTTCGAGGACTGCAGTGAATTTCAATGCAGGATGTAAAACTGCGGTCTCCAATATTGTCATGGCAATGTCTTTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCGTTACACACCCTTGGCGGTGCTTTCCTCCATAATCATCACGGCTGTGATTGGCCTAATCAACTATGAAGAGGTCATCCACCTTTGGAAAATCGACAAATTCGACTTTGTCGTCTGCATCGGTGCATACATCGGTGTCGTCTTTGGCAGTATTGAAACGGGCTTGATCGTTGCAATTACAATCTCTTTGTTAAGGGTGCTTCTCGTCACCGCAAGGCCAAGAACTTCAATATTAGGCAACATTCCCAACTCCACAATTTACAGAAGCATTGATCAATACCCAACAGCTAACCGCGTAAGCAGCATTGACTCAAGTGGGATCACCATGCTTGAAGAGGTTAACAAGAGCACTGAAAAAAGGGGTCTCAAACTTTTGCTTGCAAATCCAAGAAGCGAAGTGATCAAAAAGTTAAACGTGTCGAAGTTCATCGAGGCGATCGGACATGAACGGTTCTATCTCACAGTGGGAGAGGCTGTAACAGCCTGCAATCTCAAGCTCCACACTTGCAAGCCAAATCCTGTTGGTGCTGAATTAGATTCAACTGTGTAG 2991 49.21 MGKAGKWLKNFLSGKKFDKEHYQIANHVSVVSSGNSTIPVSSPKEKKRWSFRRPSPAKEVNTPGSNVAVAVNPSVNTTFDMEKEQEKHAMAMAAATEAAVAAAQAAAVVIRLTVASNGKDSRIEEAAAIKIQSVFRSYLARKALCALKGLVKLQAMVRGHLVRRRATETLRCMQALVTAQARARTQRIKMAEDSQPTAHSWHSSHRKSFQESRQRHTHQEIDREMEENIKIVEMDLGGSLKNRNSYSHNTYSNQENYRLSPAPSAMTDMSPRTFSGHFEDYAYGTAQSSPQCFSAMAKSDPNRIPFEFPRSEYAESLSYDYPLFPNYMANTESSKAKVRSQSAPKARPESLERQPSRRRASVEGRNIPRAVRMQRSSSHLGSAAKNYGYPPWAVKLDRSSVSLKDSECGSTCSVLTNLNYCRSVASQEVIGIMGNEEIESPHRVAIPPTKPFLVSLGANLKETFFPDDPFKQFKNQPIGAQILLWLKYFIPFLEWAPRYTFNFFKADLVAGITIASLAVPQGISYANLATIPPIIGLCKFQLCAAIDIRHAWKLQRFGGGDCGGGVASHVRPIGEGSQPGGASQGICAIAIVGFMGGAATVVCLQQLKGIMGLVHFTHETDVVSVTRSLFSQIHQWRWQSVVLGCSFLSFLLLTRYLSKKKPIFFWINALAPLLSIILGSLLVYFTHAERHGVQVIGILKKGLNPLSVSDLVFGRPHLPIAIKTGIIIGIIGLAEGVAVGRSFATLKNYHIDGNKEMIAFGLMNIVGSCTSCYLTAGPFSRTAVNFNAGCKTAVSNIVMAMSLMITLLFLTPFFRYTPLAVLSSIIITAVIGLINYEEVIHLWKIDKFDFVVCIGAYIGVVFGSIETGLIVAITISLLRVLLVTARPRTSILGNIPNSTIYRSIDQYPTANRVSSIDSSGITMLEEVNKSTEKRGLKLLLANPRSEVIKKLNVSKFIEAIGHERFYLTVGEAVTACNLKLHTCKPNPVGAELDSTV 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13719051 13727016 - CmoCh14G017790.1 Cmo14g01779 397045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01779 996 PANTHER SULFATE TRANSPORTER 436 538 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo14g01779 996 Gene3D STAS domain 909 980 IPR036513 -
Cmo14g01779 996 Pfam STAS domain 912 972 IPR002645 -
Cmo14g01779 996 SMART iq_5 123 145 IPR000048 GO:0005515
Cmo14g01779 996 SMART iq_5 146 167 IPR000048 GO:0005515
Cmo14g01779 996 ProSiteProfiles STAS domain profile. 913 976 IPR002645 -
Cmo14g01779 996 CDD STAS_SulP_like_sulfate_transporter 910 969 - -
Cmo14g01779 996 Pfam IQ calmodulin-binding motif 151 165 IPR000048 GO:0005515
Cmo14g01779 996 Pfam IQ calmodulin-binding motif 126 144 IPR000048 GO:0005515
Cmo14g01779 996 Pfam Protein of unknown function (DUF4005) 289 364 IPR025064 -
Cmo14g01779 996 ProSiteProfiles IQ motif profile. 148 175 IPR000048 GO:0005515
Cmo14g01779 996 MobiDBLite consensus disorder prediction 193 213 - -
Cmo14g01779 996 PANTHER BNAA04G05880D PROTEIN 436 538 IPR030311 GO:0008272|GO:0009507|GO:0015116
Cmo14g01779 996 Pfam Sulfate permease family 504 537 IPR011547 GO:0016021
Cmo14g01779 996 Pfam Sulfate permease family 590 854 IPR011547 GO:0016021
Cmo14g01779 996 PANTHER BNAA04G05880D PROTEIN 590 915 IPR030311 GO:0008272|GO:0009507|GO:0015116
Cmo14g01779 996 PANTHER SULFATE TRANSPORTER 913 990 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo14g01779 996 Gene3D - 123 178 - -
Cmo14g01779 996 MobiDBLite consensus disorder prediction 332 366 - -
Cmo14g01779 996 ProSiteProfiles IQ motif profile. 124 152 IPR000048 GO:0005515
Cmo14g01779 996 SUPERFAMILY SpoIIaa-like 911 976 IPR036513 -
Cmo14g01779 996 PANTHER SULFATE TRANSPORTER 590 915 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo14g01779 996 PANTHER BNAA04G05880D PROTEIN 913 990 IPR030311 GO:0008272|GO:0009507|GO:0015116
Cmo14g01779 996 MobiDBLite consensus disorder prediction 350 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01779 K17471 SULTR3; sulfate transporter 3 - cpep:111790487 795.038
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo14g01779 Cmo17g00207 CCT
Cmo08g01104 Cmo14g01779 CCT
Cmo08g01104 Cmo14g01779 ECH
Cmo14g01779 Cmo17g00207 ECH
Cmo06g01388 Cmo14g01779 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00094 Cmo-Chr1:424535 Cmo14g01779 Cmo-Chr14:13719051 1.66E-29 dispersed
Cmo06g01389 Cmo-Chr6:10193827 Cmo14g01779 Cmo-Chr14:13719051 0 dispersed
Cmo10g00702 Cmo-Chr10:3221407 Cmo14g01779 Cmo-Chr14:13719051 1.24E-35 dispersed
Cmo11g00664 Cmo-Chr11:3196822 Cmo14g01779 Cmo-Chr14:13719051 2.39E-36 dispersed
Cmo12g01130 Cmo-Chr12:10318120 Cmo14g01779 Cmo-Chr14:13719051 1.04E-32 dispersed
Cmo14g01322 Cmo-Chr14:11042130 Cmo14g01779 Cmo-Chr14:13719051 1.33E-32 dispersed
Cmo14g01779 Cmo-Chr14:13719051 Cmo11g00595 Cmo-Chr11:2867566 6.94E-175 dispersed
Cmo17g00728 Cmo-Chr17:7275951 Cmo14g01779 Cmo-Chr14:13719051 1.49E-36 dispersed
Cmo14g01779 Cmo-Chr14:13719051 Cmo17g01178 Cmo-Chr17:9479063 0 wgd
Cmo14g01779 Cmo-Chr14:13719051 Cmo17g00207 Cmo-Chr17:1221112 6.25E-104 wgd
Cmo14g01779 Cmo-Chr14:13719051 Cmo05g01215 Cmo-Chr5:9528485 1.45E-21 wgd
Cmo14g01779 Cmo-Chr14:13719051 Cmo06g01388 Cmo-Chr6:10183854 0 wgd
Cmo14g01779 Cmo-Chr14:13719051 Cmo08g01104 Cmo-Chr8:7071898 6.28E-87 wgd
Cmo14g01779 Cmo-Chr14:13719051 Cmo08g00320 Cmo-Chr8:1996246 1.18E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g547 Blo01g00116 . . Bda08g00246 Bpe04g00817 Bpe14g01207 Bma04g00767 Bma05g01099 Cmo08g01104 Cmo17g00207 Cma06g01376 Cma14g01742 Car06g01191 Car14g01570 Sed12g0964 Cpe08g00280 Cpe03g01460 Bhi01g00766 Tan10g0796 Cmetu06g2556 Lac12g2258 Hepe05g1582 . Lcy11g1577 Cla06g00605 Cam06g0643 Cec06g0646 Cco06g0649 Clacu06g0630 Cmu06g0624 Cre06g1391 Cone14ag0869 . . . Lsi05g01633 Csa02g01132 Chy05g00390 Cme06g00579 Blo02g00523 . Bda11g00594 . Bpe05g00890 Bpe13g00591 . Bma06g01568 . Cmo06g01388 Cmo14g01779 Cma08g01130 Cma17g00215 Car08g01011 Car17g00192 Cpe12g00183 Cpe17g00159 . . . . . . . Cla05g00513 Cam05g0564 Cec05g0576 Cco05g0574 Clacu05g0561 Cmu05g0532 Cre05g0601 Lsi09g01300 Csa03g01295 Chy06g00550 Cme05g00479
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007513 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01779 Cmo_Chr14 FPKM 37.095249 41.976765 27.763964 28.623207 27.744074 28.904015 24.824856 17.106264 17.552834 16.062185