Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01812 ATGGCGACGGCGACGGTGAAAGTAGAGACTGAGAAGTTGATGGGTTGCTTGACATGCCCTCTTTGCAACAACTTGTTCACTGATGCTACCACCATATCTGAATGCCTGCACACATTTTGCAGGGATTGTATCTATGAGAAGATAACCGAGGAGGAGTTAGAGGGTTGTCCTGTGTGCAACACAAATCTAGGGGGTGTGCCTTTGGAGAAACTCAGGGCAGACCACACAATGGATGATCTGAGGGAAAAGACATTCCCTTGCCAACGAAGGAAGGAGAAGGCACCTGAAACAACACAGTCTGCCGTTTCATTGCCGACCAAAAGAAAAGAGAGATCACTCTCTTCCTTAGACATCGACAACACAAATATGATTTCTCACTCTGCAGCGAAAATCCCGAAAGCTACAGCACAAGAGAACCTCGTCGTGCAACAATGTATTTCCAACATGATTCCCCAAAGAAAACTCGTCTTTGTTCAAAATAAGCAGAACAATACCCAAGTAATGGAAAGGGAAACTGATGATTTAAATCGAAAAGAAGAAGCAACTGCAACAAGTTCAAATGATTGTAATATACAAGATACTGTTGTCAAGCCAGAGCCAATCCAGATTGATGATAATTATTGCAAGGTTCAAGAGCATAGTCACAAGCCAATAATGGAAAGAGTTGAAAGAGGACTATCTTTTGGAATTTCGGGTTCCATTGAACATGGAAACTTGCAGGATGTTTCATGGGAAAGAAGATTATCCAGCAGCACTGGATCCTATGATCAGACTGTAGGTGACATTGGTGTAGAGAAACGATGCAATACGTTCTCAAATCCAATATGGTTTGCGCTAGTTGCTTCTGATCACCAGGAAGGAAATCAGCCTTTGCCTCAGATCTCCTCAAACTACTTGAGGGTCAGCGATGGCTGTATACCCGTGTCATTTATCCAGAAATATCTTGCGAAGAAACTGGGACTTGCTAGTGAGATTGAGGTGGAAATCTCATTTAAGGGCCATCCAGTGAGCTCCACATTGCATCTGCACGACCTCGTAGAACTGTGGCGACAGACAACCACAAAAATAGAACTAATACAGATATCTGTGGGCAGCTCAGCCAAAGATTTTGTGATGGTTCTATCTTATGGTCGAAAGAGTTGTCACTCTGGACAATTCCCAAATATTTGTGCTCACCTAGAGAATGATGTTCAACAAGAGATCAAATAG 1209 43.01 MATATVKVETEKLMGCLTCPLCNNLFTDATTISECLHTFCRDCIYEKITEEELEGCPVCNTNLGGVPLEKLRADHTMDDLREKTFPCQRRKEKAPETTQSAVSLPTKRKERSLSSLDIDNTNMISHSAAKIPKATAQENLVVQQCISNMIPQRKLVFVQNKQNNTQVMERETDDLNRKEEATATSSNDCNIQDTVVKPEPIQIDDNYCKVQEHSHKPIMERVERGLSFGISGSIEHGNLQDVSWERRLSSSTGSYDQTVGDIGVEKRCNTFSNPIWFALVASDHQEGNQPLPQISSNYLRVSDGCIPVSFIQKYLAKKLGLASEIEVEISFKGHPVSSTLHLHDLVELWRQTTTKIELIQISVGSSAKDFVMVLSYGRKSCHSGQFPNICAHLENDVQQEIK 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13848795 13850594 + CmoCh14G018120.1 Cmo14g01812 397078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01812 402 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Cmo14g01812 402 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Cmo14g01812 402 Coils Coil 158 178 - -
Cmo14g01812 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 109 IPR013083 -
Cmo14g01812 402 SUPERFAMILY RING/U-box 14 79 - -
Cmo14g01812 402 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 5 380 - -
Cmo14g01812 402 SMART ring_2 19 59 IPR001841 -
Cmo14g01812 402 Gene3D - 258 360 - -
Cmo14g01812 402 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 380 IPR044807 GO:0004842
Cmo14g01812 402 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01812 K16277 DRIP; E3 ubiquitin-protein ligase DRIP [EC:2.3.2.27] - csv:101216620 560.836
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01145 Cmo-Chr12:10400607 Cmo14g01812 Cmo-Chr14:13848795 6.50E-84 dispersed
Cmo14g01812 Cmo-Chr14:13848795 Cmo17g01355 Cmo-Chr17:10550986 1.32E-11 dispersed
Cmo14g01812 Cmo-Chr14:13848795 Cmo02g01817 Cmo-Chr2:10286550 1.72E-34 wgd
Cmo14g01812 Cmo-Chr14:13848795 Cmo05g01231 Cmo-Chr5:9608603 1.18E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g608 . . . . . . . . . . . Cma14g01775 . Car14g01597 . . Cpe03g01486 . . . . . . . . . . . . . . . . . . Lsi05g01665 . . Cme06g00546 . . . . . . . . . . Cmo14g01812 . . . . . . . . . . . . . Cla05g00488 Cam05g0533 Cec05g0545 Cco05g0545 Clacu05g0531 Cmu05g0503 Cre05g0571 . Csa03g01264 Chy06g00518 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014069 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01812 Cmo_Chr14 FPKM 0.137957 0.0 0.770544 0.305409 0.964233 1.188096 0.458593 23.651693 25.052505 25.03581