Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01842 ATGTTCAAGATGCAAACAAATACATTCAGAGTTGCGGTCGACGACGACGCTTTGATTCCAGATCAGATGGATCCATTAGAGGACTCGAGTTGTTGGGATTTTCTTGATTACTCCTTGTTCGTCGACGGCGACAATATCATTAACCCTTCGCTCGATCCTTTGTGCCCACCTAGTGATTCCAGGGATAGTTGCGCGCATACTGATGTTTCAGCCGGGCGTGTTGAATCTGAACAAAACGATCATTCGCGGAAGAGGGCTCGAGATGGGTCGTGCGCTGGACCAACTTCAAAAGCTTGTCGTGAGAGGTTGCGGAGAGAGAGATTAAATGATAGGTTTCTAGATTTAAGTCTTGCTTTAGAACCTGGTAGGCCTTCCAAAAATAACAAGCCGGCCATTCTTGATGATGCCATTAGAGTGTTAAATCAACTCAAGACAGAAGCCGAAGAGCTCAAACAAACTAATGAAAAGTTGCAAGAAGAAGTCGAGTGCTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAGAATGAATTTGAAAGAAGACAAAGAAAGAATCGAACGACAGTTGAAATCTATAGCCATCCCACCTCCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTTTGATCCCAATGTGGCAATATCTTCCTCCATCAGTACGCGATACATCTCAAGATCATGAGCTCAGGCCTCCTGCTGCCTAG 744 45.3 MFKMQTNTFRVAVDDDALIPDQMDPLEDSSCWDFLDYSLFVDGDNIINPSLDPLCPPSDSRDSCAHTDVSAGRVESEQNDHSRKRARDGSCAGPTSKACRERLRRERLNDRFLDLSLALEPGRPSKNNKPAILDDAIRVLNQLKTEAEELKQTNEKLQEEVECLKAEKNDLRKERMNLKEDKERIERQLKSIAIPPPGLIPGHPAAYHAAPGKMAVFPGYGLIPMWQYLPPSVRDTSQDHELRPPAA 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13948716 13951559 - CmoCh14G018420.1 Cmo14g01842 397108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01842 247 Gene3D - 95 176 IPR036638 GO:0046983
Cmo14g01842 247 PANTHER TRANSCRIPTION FACTOR BHLH104 23 247 - -
Cmo14g01842 247 PANTHER BHLH TRANSCRIPTION FACTOR 23 247 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cmo14g01842 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 143 IPR011598 GO:0046983
Cmo14g01842 247 Coils Coil 133 188 - -
Cmo14g01842 247 MobiDBLite consensus disorder prediction 52 97 - -
Cmo14g01842 247 Pfam Helix-loop-helix DNA-binding domain 96 143 IPR011598 GO:0046983
Cmo14g01842 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 163 IPR036638 GO:0046983
Cmo14g01842 247 MobiDBLite consensus disorder prediction 73 90 - -
Cmo14g01842 247 SMART finulus 98 149 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01337 Cmo14g01842 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01842 Cmo-Chr14:13948716 Cmo16g00916 Cmo-Chr16:5522341 2.08E-52 dispersed
Cmo14g01842 Cmo-Chr14:13948716 Cmo06g01337 Cmo-Chr6:9943050 9.11E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11065 PF00010 HLH 1.60E-07 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01842 - - csv:101210812 352.443