Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01843 ATGATTAAGGGTGGTGAGAGATTTCAACAGCTGGTTCTCTTCTCTTTCCGTGGCGAACTCGAATTCCCCACCAAAAGAGCGAAGAACAAACCCTTAGCGATACACAATACAACGATCAAGATGAAGATCATGGTCGCCATTAAGCGAGTCGTTGATTACGCCGTTAAAATCCGAGTGAAAGCGGACAGAACGGGCGTTGAGACCCAGAACGTGAAAATGTCGATGAACCCCTTTTGCGAGATTGCAATCGAGGAAGCCCTGCGTATCAAGGAAGCTGGTTTGGCCTCTGAGGTCGTGGCGGTCAGTATGGGTCCGGCTCAGTGCGTCGATACTCTCAGGACGGGCCTCGCGATGGGTGCTGATAGGGGCATTCATGTGGAAGCCACTGCACCCCTTTATCCTCTCTCTGTGGCTAAGCTTCTCAAAGCCCTTATTGAGGTTGAGAAGCCTGGGCTTCTTTTACTAGGCAAACAGGCTATTGATGATGATTGTAATCAAACGGGGCAGATGGTTGCAGGTCTTCTGAACTGGCCTCAAGGGACTTTTGCTTCGAAGGTTGTGATAGACAAGGAGAAGCAGGCAGTGACAGTGGACAGAGAAGTAGATGGTGGTCTTGAGACTCTCTGTTTGGACTTACCCGCCGTAATCACAACTGATTTGAGGCTGAATCAACCAAGGTATGCTACGCTCCCAAACATAATGAAAGCGAAATCAAAACCGATAAAGAAGTTCACTCCACAGGAATTAAATGTGGATGTGAAGCCAGATTTAGAGGTCGTTGAAGTTACGGAACCTCCGAAAAGAAAAGCGGGTGTCGTATTGTCGTCTGTCGATGAACTGATTGACAAGCTTAAAAATGAAGCTCATGTCATTTGA 876 47.72 MIKGGERFQQLVLFSFRGELEFPTKRAKNKPLAIHNTTIKMKIMVAIKRVVDYAVKIRVKADRTGVETQNVKMSMNPFCEIAIEEALRIKEAGLASEVVAVSMGPAQCVDTLRTGLAMGADRGIHVEATAPLYPLSVAKLLKALIEVEKPGLLLLGKQAIDDDCNQTGQMVAGLLNWPQGTFASKVVIDKEKQAVTVDREVDGGLETLCLDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKFTPQELNVDVKPDLEVVEVTEPPKRKAGVVLSSVDELIDKLKNEAHVI 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13951600 13955666 - CmoCh14G018430.1 Cmo14g01843 397109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01843 291 Gene3D HUPs 41 289 IPR014729 -
Cmo14g01843 291 CDD ETF_beta 42 245 IPR033948 -
Cmo14g01843 291 PIRSF Beta-ETF 41 291 IPR012255 GO:0009055
Cmo14g01843 291 Pfam Electron transfer flavoprotein domain 66 248 IPR014730 -
Cmo14g01843 291 ProSitePatterns Electron transfer flavoprotein beta-subunit signature. 197 217 IPR000049 GO:0009055
Cmo14g01843 291 SMART ETF_2 63 253 IPR014730 -
Cmo14g01843 291 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 41 290 IPR012255 GO:0009055
Cmo14g01843 291 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 41 284 - -
Cmo14g01843 291 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT BETA 41 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01843 K03521 fixA, etfB; electron transfer flavoprotein beta subunit - csv:101210570 475.707
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g673 . . . . . Bpe14g01245 . . . . . Cma14g01807 . Car14g01623 . . . . . . . . . . . . . . . . . . . Cone7ag0315 Cone4ag0320 Lsi05g01720 . . Cme06g00504 Blo02g00735 . . Bda13g00071 . . Bma02g00792 . . . Cmo14g01843 . . . . . . . . . . . . . . . . . . . . . Csa03g01220 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002713 3 0 2 2 2 1 2 1 1 1 1 1 3 2 2 3 1 4 2 1 2 2 2 2 2 2 1 2 2 3 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01843 Cmo_Chr14 FPKM 7.808733 7.804574 4.750775 4.932126 12.831765 9.131027 15.464845 5.82535 7.806238 7.108861