Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g01846 | ATGGATTACGCCGGATTCTTCTCCTCTGTTTCCGACTTCTCCTCGGAAGCCTCCTTCGGCTCACCGGAATCCTGTAATTTTCTTCCTTTCAATGAGAATGACTCAGAGGAAATGCTTCTGTTTGGGCTGATCTCCGCGGGCACACGGGAATCCTCCGACCCCAGTATCGGAGCGGTGCGAGTGAAGGAAGAGGAGGTCGATTCTGTGGGCGAAGATACCCGGAAGAAGGAAAGGCCTTATAGGGGGGTTCGCCGCCGGCCATGGGGTAAATTCGCGGCGGAAATTAGAGATTCCACTAGACATGGGATAAGGGTATGGTTGGGGACTTTTGATAGTGCGGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCGTTTTCGATGAGGGGTGCTGCCGCAATTCTAAATTTTCCCGTGGACAGAGTAAGGGAGTCTCTTAAAGAAATGAACTTCGGCGGAGGCGAGGCTGCTGATAGTATCACCGATGACGGCGGGTCTCCGGTAATAGCGTTGAAAAGAAAACACTCGATCAGAAGGAAAGCCATTAGCAAAAAGAACAAACAGAGGGATTTGAGGATCCAAAATGTGATGGTTTTGGAAGATTTAGGCGCAGAGTATTTGGAAGAACTTCTGGGCTCTTCTCAAAATAGCATCCCCTGTTCTTTCTAA | 666 | 50.3 | MDYAGFFSSVSDFSSEASFGSPESCNFLPFNENDSEEMLLFGLISAGTRESSDPSIGAVRVKEEEVDSVGEDTRKKERPYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNFGGGEAADSITDDGGSPVIALKRKHSIRRKAISKKNKQRDLRIQNVMVLEDLGAEYLEELLGSSQNSIPCSF | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 13963597 | 13964262 | + | CmoCh14G018460.1 | Cmo14g01846 | 397112 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g01846 | 221 | SMART | rav1_2 | 79 | 143 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g01846 | 221 | SUPERFAMILY | DNA-binding domain | 80 | 138 | IPR016177 | GO:0003677 | |
Cmo14g01846 | 221 | CDD | AP2 | 80 | 139 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g01846 | 221 | Pfam | AP2 domain | 80 | 129 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g01846 | 221 | Gene3D | AP2/ERF domain | 79 | 139 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo14g01846 | 221 | PRINTS | Ethylene responsive element binding protein signature | 80 | 91 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g01846 | 221 | PRINTS | Ethylene responsive element binding protein signature | 103 | 119 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g01846 | 221 | ProSiteProfiles | AP2/ERF domain profile. | 79 | 137 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo14g01846 | 221 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 21 | 212 | - | - | |
Cmo14g01846 | 221 | PANTHER | DNA-BINDING DOMAIN | 21 | 212 | IPR044808 | GO:0003700|GO:0009873 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g01846 | Cmo-Chr14:13963597 | Cmo07g00207 | Cmo-Chr7:1043426 | 2.94E-35 | dispersed | |
Cmo14g01846 | Cmo-Chr14:13963597 | Cmo19g00097 | Cmo-Chr19:548824 | 2.61E-48 | wgd | |
Cmo14g01846 | Cmo-Chr14:13963597 | Cmo02g01795 | Cmo-Chr2:10198332 | 1.99E-52 | wgd | |
Cmo14g01846 | Cmo-Chr14:13963597 | Cmo06g01334 | Cmo-Chr6:9931260 | 9.97E-101 | wgd | |
Cmo14g01846 | Cmo-Chr14:13963597 | Cmo08g01062 | Cmo-Chr8:6866695 | 4.11E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11068 | PF00847 | AP2 | 1.40E-14 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g01846 | K14516 | - | csv:101210326 | 342.043 |