Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01846 ATGGATTACGCCGGATTCTTCTCCTCTGTTTCCGACTTCTCCTCGGAAGCCTCCTTCGGCTCACCGGAATCCTGTAATTTTCTTCCTTTCAATGAGAATGACTCAGAGGAAATGCTTCTGTTTGGGCTGATCTCCGCGGGCACACGGGAATCCTCCGACCCCAGTATCGGAGCGGTGCGAGTGAAGGAAGAGGAGGTCGATTCTGTGGGCGAAGATACCCGGAAGAAGGAAAGGCCTTATAGGGGGGTTCGCCGCCGGCCATGGGGTAAATTCGCGGCGGAAATTAGAGATTCCACTAGACATGGGATAAGGGTATGGTTGGGGACTTTTGATAGTGCGGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCGTTTTCGATGAGGGGTGCTGCCGCAATTCTAAATTTTCCCGTGGACAGAGTAAGGGAGTCTCTTAAAGAAATGAACTTCGGCGGAGGCGAGGCTGCTGATAGTATCACCGATGACGGCGGGTCTCCGGTAATAGCGTTGAAAAGAAAACACTCGATCAGAAGGAAAGCCATTAGCAAAAAGAACAAACAGAGGGATTTGAGGATCCAAAATGTGATGGTTTTGGAAGATTTAGGCGCAGAGTATTTGGAAGAACTTCTGGGCTCTTCTCAAAATAGCATCCCCTGTTCTTTCTAA 666 50.3 MDYAGFFSSVSDFSSEASFGSPESCNFLPFNENDSEEMLLFGLISAGTRESSDPSIGAVRVKEEEVDSVGEDTRKKERPYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNFGGGEAADSITDDGGSPVIALKRKHSIRRKAISKKNKQRDLRIQNVMVLEDLGAEYLEELLGSSQNSIPCSF 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13963597 13964262 + CmoCh14G018460.1 Cmo14g01846 397112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01846 221 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Cmo14g01846 221 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Cmo14g01846 221 CDD AP2 80 139 IPR001471 GO:0003700|GO:0006355
Cmo14g01846 221 Pfam AP2 domain 80 129 IPR001471 GO:0003700|GO:0006355
Cmo14g01846 221 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Cmo14g01846 221 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Cmo14g01846 221 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Cmo14g01846 221 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Cmo14g01846 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 21 212 - -
Cmo14g01846 221 PANTHER DNA-BINDING DOMAIN 21 212 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01846 Cmo-Chr14:13963597 Cmo07g00207 Cmo-Chr7:1043426 2.94E-35 dispersed
Cmo14g01846 Cmo-Chr14:13963597 Cmo19g00097 Cmo-Chr19:548824 2.61E-48 wgd
Cmo14g01846 Cmo-Chr14:13963597 Cmo02g01795 Cmo-Chr2:10198332 1.99E-52 wgd
Cmo14g01846 Cmo-Chr14:13963597 Cmo06g01334 Cmo-Chr6:9931260 9.97E-101 wgd
Cmo14g01846 Cmo-Chr14:13963597 Cmo08g01062 Cmo-Chr8:6866695 4.11E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11068 PF00847 AP2 1.40E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01846 K14516 - csv:101210326 342.043