Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01857 ATGTCCCTAGAGCAGCTCAAGAAGCAAGCGTTTTCTTTCCTTAATGAAAGATTCAAAGTAGCCAGGCTCGTCTTCACTGACATAAATGATCACATAATTTTAGAGGCTTCCATTCTCTGCCAATATCTAAAATGGCCGAACCTTCATGATAGAATTGACAAAGGAATGCACTTTCCTAATTCTTGTGAATACATATTCGATATACAAAAGATCATTCATTCATCTAGAGGGTATACCCTTCGAGATCATTCATCATTCATTCTAATTAGTGTGTACTTTCCTGTATTTCCAAGGTTGGCAGAGGAAGCAACAAACAAAGATCCATGTACCCCTGATGCTAAAACGATGACAACCATAGCTGAGGCATCCTTTGAGATAGATGATTATTGGAGAATTGTTGATGTCCTTCACAATCGGCTTCGTAGTGTTGAGTGGAAGCAGTGGAAACAATCCTACAAATCACTGGTACTCCTTGAGTTCTTGTTAACCCACGGACCAGAAGAGTTAGCTGACGAGTTCAAGAGAGATTCATATATCATCGAAGCACTTGGAACTTTTAAGCATGTAGATGAAAGGGGGTTCGACTGGGGTGAAATCATGCACAAAAAGTCACAATCGATACTACAACTACTGAAAGGAGGCCAGACTTTAAAAGAATCACGTTTGAGAGCTCTGAAAATAACGAGAGAAATTCAAGGATTTGGTAGTAGTTCATCACCTTCTACGTCATCATCAATACTGTCACCCAACTTTTCACCAAGCTTTTCGTTTGCATCAACAAGAACTTCATCATTTGGTTCATATTCTACTACTTTGAGCCCCGCATGGAGTGATTTACATGAGGGAAACAATTTTGAAAACTCCCCATCCCCTGATGATGCCTTTGAAAGCCATATTTGGGGAAGAAAGGGAAATGACAACAACTCTACGGAAAAAAACTTTACTATCAAAGGACAACAACTTTGGGAATGTCCCCTAATCGAAGAGGATGAATCTCTACTTGACCCTGAGGATGAGGAAAAGAAACCAACAAGTTTACTGAATGAAGTTTGCACAAAGCTGGTGGCGTTAAGTCCTACCAGTCTGGAAGGAGCAGGATTTGGAAAAGCTTCTAATAAATGTGAAGATTGA 1131 39.88 MSLEQLKKQAFSFLNERFKVARLVFTDINDHIILEASILCQYLKWPNLHDRIDKGMHFPNSCEYIFDIQKIIHSSRGYTLRDHSSFILISVYFPVFPRLAEEATNKDPCTPDAKTMTTIAEASFEIDDYWRIVDVLHNRLRSVEWKQWKQSYKSLVLLEFLLTHGPEELADEFKRDSYIIEALGTFKHVDERGFDWGEIMHKKSQSILQLLKGGQTLKESRLRALKITREIQGFGSSSSPSTSSSILSPNFSPSFSFASTRTSSFGSYSTTLSPAWSDLHEGNNFENSPSPDDAFESHIWGRKGNDNNSTEKNFTIKGQQLWECPLIEEDESLLDPEDEEKKPTSLLNEVCTKLVALSPTSLEGAGFGKASNKCED 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14008792 14010273 + CmoCh14G018570.1 Cmo14g01857 397123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01857 376 PANTHER ENTH/VHS FAMILY PROTEIN 2 31 - -
Cmo14g01857 376 PANTHER ENTH/VHS FAMILY PROTEIN 99 364 - -
Cmo14g01857 376 SMART enth_2 94 221 IPR013809 -
Cmo14g01857 376 SUPERFAMILY ENTH/VHS domain 98 235 IPR008942 -
Cmo14g01857 376 ProSiteProfiles ENTH domain profile. 88 221 IPR013809 -
Cmo14g01857 376 Pfam ENTH domain 101 214 IPR013809 -
Cmo14g01857 376 PANTHER EPSIN/ENT-RELATED 2 31 - -
Cmo14g01857 376 PANTHER EPSIN/ENT-RELATED 99 364 - -
Cmo14g01857 376 Gene3D - 96 234 IPR008942 -
Cmo14g01857 376 CDD ENTH 98 212 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01857 K12471 EPN; epsin - csv:101212041 398.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00223 Cmo-Chr4:1116374 Cmo14g01857 Cmo-Chr14:14008792 1.14E-32 dispersed
Cmo14g01857 Cmo-Chr14:14008792 Cmo17g00567 Cmo-Chr17:5827162 4.50E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g725 . . . . . . . . . . . Cma14g01819 . Car14g01630 . . Cpe03g01521 Bhi01g00719 . . . Hepe05g1664 . . . . . . . . . Cone14ag0155 . . . Lsi05g01740 . . Cme06g00481 . . . . . . . . . . Cmo14g01857 . . . . . . . . . . . . . Cla05g00437 Cam05g0476 Cec05g0485 Cco05g0485 Clacu05g0473 Cmu05g0451 Cre05g0513 . Csa03g01199 Chy06g00463 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012486 0 2 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01857 Cmo_Chr14 FPKM 3.026165 3.431095 26.69187 28.117914 17.516188 18.121248 16.286142 17.512733 17.367466 15.817351
Cmo14g01857 Cmo_Chr00 FPKM 8.711223 9.171024 9.887275 9.583591 3.506994 2.758097 2.57308 18.408001 18.574533 17.278147
Cmo14g01857 Cmo_Chr00 FPKM 9.26493 7.810123 2.576783 1.992514 0.446652 0.894468 0.731388 5.418288 5.278246 5.710832