Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01862 ATGGGTACCTCTGTTAAGGGCCTCATGAAAGGAATTAAATACATTTCACAGATTTTCGATGAAAAAGAACAGGAAATGCAGATTGGGCTTCCCACTGACGTTAAGCATGTCGCTCACATTGGATGGGATGGTCCATCTGCTAATCAGAATAATACACCTACCTGGATGAACGAGTTCAAATCTTCGCCACAATCCCAAAACTCAGGCGATTTGACTAATTCTACTGGGGAACTTGCTCTTTCTTCTGTCCGAGAATCTGGAGAGCTAGATGTGAAAAAGGAAGGTCGAGCTCCAAGGTCAAAACGCCAAACTTCAACAGACTCTTCCTCATCCTTAGACTCTTCTTCTGCTCGGCGGAACTCGGAGAAGAGCTCCAGGCGTCAGCGATCATCATGCCCCTCAGGTGACTCGGGACCCCAGGAAGGTAGTTCGCGACATTCACGACGTCGTCGTGGTTCAGCTCCTGGAAATGAAACAAGCACAGAAAATCCTGTACCAAAACATTCTCATCGGAGGAAATCTAAGGGGTCATCGGACGGTGGTGAATCATCAAAATCAAGAAACAACGACTCTTTAACAGACATAACTCTACCAGTTGTTGACGAAGAGAAGGGATGA 618 46.28 MGTSVKGLMKGIKYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSANQNNTPTWMNEFKSSPQSQNSGDLTNSTGELALSSVRESGELDVKKEGRAPRSKRQTSTDSSSSLDSSSARRNSEKSSRRQRSSCPSGDSGPQEGSSRHSRRRRGSAPGNETSTENPVPKHSHRRKSKGSSDGGESSKSRNNDSLTDITLPVVDEEKG 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14023227 14024723 + CmoCh14G018620.1 Cmo14g01862 397128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01862 205 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC5-LIKE 1 201 - -
Cmo14g01862 205 MobiDBLite consensus disorder prediction 86 101 - -
Cmo14g01862 205 SMART PBD_5 28 62 IPR000095 -
Cmo14g01862 205 CDD CRIB 26 62 - -
Cmo14g01862 205 MobiDBLite consensus disorder prediction 39 205 - -
Cmo14g01862 205 MobiDBLite consensus disorder prediction 127 141 - -
Cmo14g01862 205 MobiDBLite consensus disorder prediction 44 81 - -
Cmo14g01862 205 Gene3D CRIB domain 21 71 IPR036936 -
Cmo14g01862 205 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 1 201 IPR044510 -
Cmo14g01862 205 MobiDBLite consensus disorder prediction 102 118 - -
Cmo14g01862 205 MobiDBLite consensus disorder prediction 181 195 - -
Cmo14g01862 205 Pfam P21-Rho-binding domain 27 62 IPR000095 -
Cmo14g01862 205 ProSiteProfiles CRIB domain profile. 28 41 IPR000095 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01862 - - - csv:101211802 281.182
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01321 Cmo14g01862 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00549 Cmo-Chr3:5490502 Cmo14g01862 Cmo-Chr14:14023227 1.08E-17 dispersed
Cmo06g01321 Cmo-Chr6:9867219 Cmo14g01862 Cmo-Chr14:14023227 7.32E-76 dispersed
Cmo13g00748 Cmo-Chr13:7332967 Cmo14g01862 Cmo-Chr14:14023227 3.14E-24 dispersed
Cmo14g01862 Cmo-Chr14:14023227 Cmo18g00289 Cmo-Chr18:1901556 2.32E-26 dispersed
Cmo14g01862 Cmo-Chr14:14023227 Cmo19g00114 Cmo-Chr19:671261 4.95E-24 wgd
Cmo14g01862 Cmo-Chr14:14023227 Cmo02g01778 Cmo-Chr2:10134295 2.73E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g733 . . . . . . . . . . Cma06g01313 Cma14g01822 Car06g01127 Car14g01635 . Cpe08g00342 . Bhi01g00711 . . . Hepe05g1668 . . . . . . . . . . . . . Lsi05g01745 . . . . . . . . . . . . Cmo06g01321 Cmo14g01862 . . . . . . . . . . . . . . . . . . . . . Csa03g01195 Chy06g00459 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000834 1 5 1 3 2 3 5 2 3 3 3 2 5 3 3 4 1 2 5 3 3 3 3 3 3 3 2 5 3 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01862 Cmo_Chr14 FPKM 21.072777 20.659573 1.706821 2.298626 19.060186 20.119083 16.726282 0.0 0.256056 0.141216