Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01889 ATGAGCGTAAGAATTAGTAACATAAGCACTAGATTGCACTGCCCCATGTCTCCCAAGGCTCGAGAATCGGCATATAGGCACAAAAGCGCGGTGCAAATTGTGTCGGCAGACAAGGGTTTAAGGGTTTCGATAATGGGGACGCCCTTTCACATTCCGGTCACTGCTGCTCAGGTGGGAACCTACTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCCGACTTTGTTCATCAGTTCTATTCTGATGCCAGTACTATGCTTCGTATTGATGGCAATTTCAGAGAGACCGCCACTGCAATGCTCCAAATACACGCTCTTGTTATGTCACTTAGTTATACCGGGATTGAGATCAAGACAGCACATTCACTTGAATCATGGAATGGTGGTGTTCTTGTGATGGTTTCTGGTTCTGTTCAAATGAAGAATTTCAATCGAGTGAGAAAATTTGTGCAAACTTTTTTTCTTGCACCTCAGGAGAAAGGCTATTTTGTTTTGAATGATATCTTTCACTTTGTTGATGAGGAGCCAGTGCACCATTATCCAGCAGTCTTATTAAGTCAGACCAATCTGGATCCCACCTTAAATGTTCCTGCCGCAGTTCCAGAGACAGTGCCCAATTACTCACTCAATGGACCAGTCCAGGTGCGAGAGTTTACAGCCCCTGTTGTCAAAGAAAATGGTCACATGGATAGCCATAAGTTTGTAGAGCAGCAACTGCAGCAAGTTCCCGAGCCGAAAAACGTCATTGAGGAAAATACAACAGAAGTAAACTCTATGCATCAAAACACCTCAACTGTTTTGCAAGATCATTTGCCTGTTTCTGTTGAAGAACATGCTGAGGAGCCCCAAAAGCACACATATGCTTCAATTCTAAGAGTTTCTAAAGGACAAGACGCCCCCGCTCCCACCGTTGCACCTCCGTATCCTGTTGGTAAGGGCACACAACCTGCTTCGGAGCAAAACTACACTCCAGCTCCCACCAGTCAGCAACTGACTTCAGCTCCCCAAAATAATTCTGAAAGGGAACAGACAGGAGGAGGGGAGTTCCCTTCTACTGATGATGAAGGTGAAATAAAGTCTGTTTATGTAAGAAACTTGCCATCTACTGTGTCTGCTTCAGAAGTTGAGGAGGAATTCAAGCATTTTGGCAAACTCAGTTCTGATGGTGTGGTTATTAGGAGTCGCAAGGACATTGGTTACTGCTACGCCTTCGTCGAATTTGAAGACATGACTGGGGTCCAAAATGCAATCAAGGCGGGTACTGCCCAGGTTGCTGGGCGTCAAGTATACATCGAGGAGCGGAGAGCGAACAGCAGCATCCCATACCGAGGAGGAAGAAGGGGTAGAGGAAGAGGGAGCTACCACACCGAGTCTTCTAAAGGGCATTATAGCTCTCGGAGTTACAGTATGGGAGTTCGAGATGGAAGCGAGCGCGAGTACATCAGACCGAGGGGCAATGGCTTTTATCGACCGACTACTCGACAGCAGAAAGAGAACCTAACCCATCAAGTATCAAGAAACGGAGAAAGTCCATCGGAGTCGTCATAG 1551 46.49 MSVRISNISTRLHCPMSPKARESAYRHKSAVQIVSADKGLRVSIMGTPFHIPVTAAQVGTYFVGQYYQVLQQQPDFVHQFYSDASTMLRIDGNFRETATAMLQIHALVMSLSYTGIEIKTAHSLESWNGGVLVMVSGSVQMKNFNRVRKFVQTFFLAPQEKGYFVLNDIFHFVDEEPVHHYPAVLLSQTNLDPTLNVPAAVPETVPNYSLNGPVQVREFTAPVVKENGHMDSHKFVEQQLQQVPEPKNVIEENTTEVNSMHQNTSTVLQDHLPVSVEEHAEEPQKHTYASILRVSKGQDAPAPTVAPPYPVGKGTQPASEQNYTPAPTSQQLTSAPQNNSEREQTGGGEFPSTDDEGEIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRKDIGYCYAFVEFEDMTGVQNAIKAGTAQVAGRQVYIEERRANSSIPYRGGRRGRGRGSYHTESSKGHYSSRSYSMGVRDGSEREYIRPRGNGFYRPTTRQQKENLTHQVSRNGESPSESS 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14122236 14126229 + CmoCh14G018890.1 Cmo14g01889 397155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01889 516 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 362 429 IPR000504 GO:0003723
Cmo14g01889 516 SMART rrm1_1 361 433 IPR000504 GO:0003723
Cmo14g01889 516 MobiDBLite consensus disorder prediction 490 516 - -
Cmo14g01889 516 MobiDBLite consensus disorder prediction 315 347 - -
Cmo14g01889 516 PANTHER OS02G0131700 PROTEIN 52 500 - -
Cmo14g01889 516 SUPERFAMILY RNA-binding domain, RBD 356 464 IPR035979 GO:0003676
Cmo14g01889 516 Gene3D - 328 490 IPR012677 -
Cmo14g01889 516 MobiDBLite consensus disorder prediction 458 472 - -
Cmo14g01889 516 SUPERFAMILY NTF2-like 54 173 IPR032710 -
Cmo14g01889 516 CDD RRM_SF 362 433 - -
Cmo14g01889 516 MobiDBLite consensus disorder prediction 441 516 - -
Cmo14g01889 516 ProSiteProfiles Nuclear transport factor 2 domain profile. 58 172 IPR018222 -
Cmo14g01889 516 MobiDBLite consensus disorder prediction 296 357 - -
Cmo14g01889 516 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 360 437 IPR000504 GO:0003723
Cmo14g01889 516 Pfam Nuclear transport factor 2 (NTF2) domain 58 172 IPR002075 -
Cmo14g01889 516 Gene3D - 51 176 - -
Cmo14g01889 516 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 52 500 IPR039539 -
Cmo14g01889 516 CDD NTF2 54 174 IPR018222 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01889 - - - csv:101202971 827.394
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01295 Cmo14g01889 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00043 Cmo-Chr8:221935 Cmo14g01889 Cmo-Chr14:14122236 1.38E-117 dispersed
Cmo10g00315 Cmo-Chr10:1412006 Cmo14g01889 Cmo-Chr14:14122236 5.88E-52 dispersed
Cmo11g00213 Cmo-Chr11:1053030 Cmo14g01889 Cmo-Chr14:14122236 6.91E-53 dispersed
Cmo14g01889 Cmo-Chr14:14122236 Cmo17g01327 Cmo-Chr17:10408552 2.91E-15 dispersed
Cmo14g01889 Cmo-Chr14:14122236 Cmo06g01295 Cmo-Chr6:9758346 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g785 . . . . . Bpe14g01284 . . . . Cma06g01289 Cma14g01845 Car06g01107 Car14g01653 . Cpe08g00362 Cpe03g01545 . . . . . . . . . . . . . . . . Cone7ag0352 Cone4ag0365 Lsi05g01775 . . . Blo02g00687 . . Bda13g00036 . . . . . Cmo06g01295 Cmo14g01889 . . . . . . . . . . . . . Cla05g00405 Cam05g0442 Cec05g0449 Cco05g0450 Clacu05g0439 Cmu05g0417 Cre05g0479 . Csa03g01165 Chy06g00427 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007215 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01889 Cmo_Chr14 FPKM 5.680413 7.545468 9.653285 7.865873 8.561288 9.073358 8.031084 9.64966 7.993348 8.3321