Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01893 ATGGTGGAATCATGCAAGAAACCGTCGTCGGTTCAGCTGGTTAAGAGGCTTGACTTCTCCAATTTGCTTGGTTTAGATATTAACCTGAAAAATGGGAGTCTTAAAGAAGGAACACTTAACTGGGAGATACTACAGTTCAAGGCAAAGTTTCCTCGAGAAGTTTTGCTTTGTAGAGTTGGAGATTTTTACGAAGCAATTGGAATAGATGCTTGCATACTTGTCGAATATGCTGGTTTGAATCCTTTTGGAGGTCAGCGTATGGATAGCGTTCCGAAAGCTGGTTGCCCTGTTGTGAATCTTCGTCAAACTTTGGATGATCTGACTCGTAACGGGTTCTCAGTGGTGAGGAACTGTGATGACTGCATAGTGGAAGAAGTTCAAGGACCAATGCAAGCTCGTTCTCGCAAAGGACGTTTTATATCTGGGCATGCACACCCGGGCAGTCCCTATGTCTTTGGGCTTGTTGGGGTTGATCATGATCTCGACTTTCCAGAACCAATGCCTGTGGTCGGTAGGAATATCTCGATCTGCAAGAGGCTATTGCATAAGCCTTGTGATAGAGACCATGAAGACATATTCGTCAGAGGATGGTTTGACAGAGGAGGCCTTGGTACTTGTCGCTGGGGTGAATTCGGTGAGGGTGGTCGGCTATGGGGGGAATGTAATTCCAGACATTTCGAGTGGTTCGATGGAAATCCTCTTACTAATCTTTTGTCTAAGGTTAAAGATCTTTATGGTCTTGATGATGAAGTTACATTTAGGAACGTAACGATATCGTCCGAAAATAGGCCACATCCATTAACACTGGGAACTGCAACACAGATTGGTGCCATACCAACAGAGGGAATACCGTGTTTGTTGAAGGTGTTGCTTCCATCAAATTGTGCTGGCCTTCCTGCATTGCTTATGAGCAATGTCACATGTGCAATTCCAGACTTCACTTGCTTTCCACCCGCCAAGCTCGTGAAGTTACTGGAAATGAGGGAAGCCAATCATATTGAGTTCTGTAGAATGAAGAACGTACTCGACGAAATCTTACACATGCATAAAAATTGCGAGTTAAGCAATATCCTGAAATTGTTGATGGATCCTTCATCTGTGGCAACTGGGTTGAAAATTGACTACGATACATTTGTTGACAAATGTGAATGGGCTTCCAGTAGAGTTGGCGAAATGATTTTTCTCGATAATGAAAGCGAAAGCGATCAGAAAATCAATTCTTATTTTATCATTCCTAATGATTTTTTTGAGGATATGGAATCTTCTTGGAAAGGTCGTGTGAAAAGGATTCACATTGAAGAAGTGTGTACAGAAGTAGAAAGTGCAGCTGAAGCACTGTCTCTAGCAGTTACTGAAGATTTCGTCCCGATCATTTCAAGAATCAAGGCTACTACTGCGCCGCTAGGAGGTCCAAAGGGAGAAATATTGTATGCTCGGGATAATCAATCTGTCTGGTTCAAAGGAAGACGGTTTGCACCAGCTGTATGGGCTGGAAGCCCTGGAGAAGAAGAAATTAAACAATTGAAACCTGCTCTTGATTCAAAGGGTAAAAAGGTCGGGGACGAGTGGTACCAAGAGGCCAATGCCAAAGCAAAAGCAAGAGTAGTGGATTTGCTGAGGCAACTTTCCTCTGAATTGCTTGCTAAAATGAACGTTCTAATATTTGCTTCCATGTTACTCATTATCGCCAAGGCGTTATTCGCTCATGGCAGGAAATCAATGGAGGGGAAGGTTGGGATGAAGCTGGTTGGACTATCTCCGTATTGGTTTGATGTGATAGAAGGGAATGCTGTGCAGAATAGTATTGAGATGGAGTCGTTGTTTCTTTTGACGGGTCCAAATGGGGGTGGGAAATCTAGCTTGCTTCGATCCATTTGTGCAGCTGCTTTGCTTGGGATATGTGGATTTATGGTGCCAGCAGAGTCTGCCCTGATTCCTCATTTTGATTCTATTATGCTTCATATGAAATCTTTTGATAGCCCTGCTGATGGGAAAAGTTCTTTTCAGGTGGAAATGTCAGAGATGAGATCCATCATGAGTAGAGCAACGGAAAGCAGCCTCGTACTTATAGATGAAATCTGTCGAGGAACAGAAACAGCAAAAGGCACTTGTATTGCAGGGAGCATTGTTGAAGCTCTTGATAAAGTTGGGTGCCTTGGCATTGTCTCCACTCACTTGCATGGTATATTCAATTTGCCTTTAGATATCAATAACACTGTGTTCAAAGCAATGGGAACTGTGTGTACTGATGGCCGAACGGTTCCCACTTGGAAGTTGATCGGTGGAATATGTAGAGAGAGCCTTGCCTTTGAAACAGCAAAGAATGAAGGAATCTGTGAAGCTATAATTCATAGGGCCCAAGATTTGTATCTCTCGAATTATGTTGAACAAGGGATTTCAGGAAAACAGAAGATGAATTTGTATCCCTCAAATTCTTCTCATGCAAGGCTTAATGGCAATGACAAACCCCATCTCCTGTCAAATGGTGTTACAGTAGAAGCTGAACGCCCAAAAACAGAGAAAACTAAGAAAAAGGTTGTCTCTTGGAAGGAAATTGAGGGTGCTATCACTGCAATATGCCAAAAGAAGCTGATAGAGTTTCATAAGGATAAAAACACATTGAAACCTGCAGAAATCCAATGTGTTTTGATTGATGCTAGAGAGAAGCCACCTCCATCCACAGTCGGTGCTTCGAGTGTGTATGTAATTCTTAGACCAGATGGTAAATTCTACGTCGGACAGACTGATGATCTAGAGGGTCGAGTCCATTCACATCGTTTAAAAGAAGGAATGCGGGATGCTGCATTTCTTTATTTTATAGTACCTGGGAAGAGCTTGGCATGCCAGCTTGAAACTCTTCTCATCAATCGACTTCCTGATCACGGGTTACAGCTAACTAATGTTGCTGATGGAAAGCACCGAAATTTTGGCACATCCAATCTCTTATCAGAGAATGTGACTGTTTGTTCATAA 2973 42.72 MVESCKKPSSVQLVKRLDFSNLLGLDINLKNGSLKEGTLNWEILQFKAKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGQRMDSVPKAGCPVVNLRQTLDDLTRNGFSVVRNCDDCIVEEVQGPMQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGRNISICKRLLHKPCDRDHEDIFVRGWFDRGGLGTCRWGEFGEGGRLWGECNSRHFEWFDGNPLTNLLSKVKDLYGLDDEVTFRNVTISSENRPHPLTLGTATQIGAIPTEGIPCLLKVLLPSNCAGLPALLMSNVTCAIPDFTCFPPAKLVKLLEMREANHIEFCRMKNVLDEILHMHKNCELSNILKLLMDPSSVATGLKIDYDTFVDKCEWASSRVGEMIFLDNESESDQKINSYFIIPNDFFEDMESSWKGRVKRIHIEEVCTEVESAAEALSLAVTEDFVPIISRIKATTAPLGGPKGEILYARDNQSVWFKGRRFAPAVWAGSPGEEEIKQLKPALDSKGKKVGDEWYQEANAKAKARVVDLLRQLSSELLAKMNVLIFASMLLIIAKALFAHGRKSMEGKVGMKLVGLSPYWFDVIEGNAVQNSIEMESLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPHFDSIMLHMKSFDSPADGKSSFQVEMSEMRSIMSRATESSLVLIDEICRGTETAKGTCIAGSIVEALDKVGCLGIVSTHLHGIFNLPLDINNTVFKAMGTVCTDGRTVPTWKLIGGICRESLAFETAKNEGICEAIIHRAQDLYLSNYVEQGISGKQKMNLYPSNSSHARLNGNDKPHLLSNGVTVEAERPKTEKTKKKVVSWKEIEGAITAICQKKLIEFHKDKNTLKPAEIQCVLIDAREKPPPSTVGASSVYVILRPDGKFYVGQTDDLEGRVHSHRLKEGMRDAAFLYFIVPGKSLACQLETLLINRLPDHGLQLTNVADGKHRNFGTSNLLSENVTVCS 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14135941 14146630 + CmoCh14G018930.1 Cmo14g01893 397159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01893 990 SMART mutATP5 605 791 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cmo14g01893 990 ProSitePatterns DNA mismatch repair proteins mutS family signature. 686 702 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cmo14g01893 990 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 83 940 - -
Cmo14g01893 990 SUPERFAMILY GIY-YIG endonuclease 898 961 IPR035901 -
Cmo14g01893 990 SUPERFAMILY DNA repair protein MutS, domain I 32 148 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cmo14g01893 990 Pfam MutS domain I 44 116 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cmo14g01893 990 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 83 940 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cmo14g01893 990 Gene3D - 584 870 IPR027417 -
Cmo14g01893 990 Pfam MutS domain V 609 789 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cmo14g01893 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 789 IPR027417 -
Cmo14g01893 990 CDD ABC_MutS_homologs 595 778 - -
Cmo14g01893 990 Gene3D DNA repair protein MutS, domain I 34 142 IPR016151 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01893 - - - csv:101209091 1655.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01893 Cmo-Chr14:14135941 Cmo16g00135 Cmo-Chr16:625008 4.58E-19 dispersed
Cmo14g01893 Cmo-Chr14:14135941 Cmo05g01342 Cmo-Chr5:10441215 2.20E-24 transposed
Cmo14g01893 Cmo-Chr14:14135941 Cmo08g00455 Cmo-Chr8:2815407 2.01E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g793 . . . . . Bpe14g01287 . . . . . . . Car14g01656 . . Cpe03g01548 . . . . . . . . . . . . . . Cone14ag0185 . . . . . . Cme06g00444 Blo02g00683 . . Bda13g00033 . . Bma02g00746 . . . Cmo14g01893 . . . . . . . . . . . . . . . . . . . . . Csa03g01161 Chy06g00424 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01893 Cmo_Chr14 FPKM 2.738414 2.476451 4.399203 3.672184 6.456692 6.049481 6.158287 10.975553 10.523675 11.636891