Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01905 ATGGGTGAAGTGAAGCTGTATGGGAACTGGTCGAGTCCTTTCACTTACAGAGTCATATGGGCTTTAGCCATCAAAGGCATACCCTACGAATACGTAGAAGAAGACCTCTCCAACAAAAGCCCTTTGCTCCTTCACTATAATCCCATCCACAAGAAGGTCCCTGTCCTCGTCCATGGCGGAAAACCCATCTGCGAATCCACTCTCATCCTCGAATACATCAACGAGACATGGCCGCAGAATCCCCTGTTCCCCGCCGATCCCCTCGACCGAGCCGCAGCTCGGTTTTGGATTCGATTCGCCGAGGATAAGGGCCCAGCGACATGGAGAATGTTCTGTTCCGGCGGGGAGGAACACTTGAAGGCGAAGTGGGAGAGCTTGGAGATGCTGCAGATCGTGGAAGAAAGAGGCATCGGCGAGGGGAAGTTCTTCGGCGGAGAGACGATCGGGATGGTGGATTTGGTGTACGGAATATTTGGAGATTGGTTGGGAGTGATCGAAGAGGTGATCGGCGAGAAACTGGTGGAAGCCGATTCATTTCCTCGGCTGCACGCTTGGATCAGGGCTTTTCTGGAAGCTCCGACGATTCGAGAGAACCGTCCCGATCGAGATCGGATGGTCGTCACTTTCAAGGCCTTGAGAGAGCGGCTTCTGAAATCGACATCCCAGTAA 669 53.36 MGEVKLYGNWSSPFTYRVIWALAIKGIPYEYVEEDLSNKSPLLLHYNPIHKKVPVLVHGGKPICESTLILEYINETWPQNPLFPADPLDRAAARFWIRFAEDKGPATWRMFCSGGEEHLKAKWESLEMLQIVEERGIGEGKFFGGETIGMVDLVYGIFGDWLGVIEEVIGEKLVEADSFPRLHAWIRAFLEAPTIRENRPDRDRMVVTFKALRERLLKSTSQ 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14199702 14201044 - CmoCh14G019050.1 Cmo14g01905 397171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01905 222 CDD GST_N_Tau 4 77 - -
Cmo14g01905 222 PRINTS Omega-class glutathione S-transferase signature 2 17 IPR005442 GO:0004364|GO:0005737
Cmo14g01905 222 PRINTS Omega-class glutathione S-transferase signature 77 91 IPR005442 GO:0004364|GO:0005737
Cmo14g01905 222 PRINTS Omega-class glutathione S-transferase signature 142 161 IPR005442 GO:0004364|GO:0005737
Cmo14g01905 222 Gene3D Glutaredoxin 1 85 - -
Cmo14g01905 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cmo14g01905 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 209 IPR010987 -
Cmo14g01905 222 Pfam Glutathione S-transferase, N-terminal domain 3 74 IPR004045 -
Cmo14g01905 222 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Cmo14g01905 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 215 IPR045073 -
Cmo14g01905 222 Gene3D - 86 220 - -
Cmo14g01905 222 CDD GST_C_Tau 87 212 IPR045074 GO:0004364|GO:0006749
Cmo14g01905 222 SFLD Main.3: Omega- and Tau-like 1 219 IPR045073 -
Cmo14g01905 222 SFLD Main (cytGST) 1 219 - -
Cmo14g01905 222 SUPERFAMILY GST C-terminal domain-like 75 216 IPR036282 -
Cmo14g01905 222 PANTHER GLUTATHIONE S-TRANSFERASE 1 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01905 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - pvy:116142227 315.849
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01286 Cmo14g01905 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00338 Cmo-Chr6:1635847 Cmo14g01905 Cmo-Chr14:14199702 2.33E-11 dispersed
Cmo06g01186 Cmo-Chr6:9033267 Cmo14g01905 Cmo-Chr14:14199702 2.65E-69 dispersed
Cmo14g01905 Cmo-Chr14:14199702 Cmo14g02022 Cmo-Chr14:14807738 3.80E-17 dispersed
Cmo14g01907 Cmo-Chr14:14203150 Cmo14g01905 Cmo-Chr14:14199702 9.54E-33 dispersed
Cmo14g01905 Cmo-Chr14:14199702 Cmo14g01906 Cmo-Chr14:14201254 4.91E-98 tandem
Cmo14g01905 Cmo-Chr14:14199702 Cmo06g01285 Cmo-Chr6:9685452 8.00E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g816 Blo01g00311 . . Bda08g00016 . . . Bma05g01266 . . . Cma14g01861 . . . Cpe08g00369 Cpe03g01558 Bhi01g00030 . . . . . . . . . . . . . . . . . Lsi05g01792 . . Cme06g00431 . . . . . . . . . Cmo06g01286 Cmo14g01905 . . . . . . . . . . . . . . . . . . . . . Csa03g01146 Chy06g00410 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01905 Cmo_Chr14 FPKM 12.943281 14.067875 14.411901 14.810463 15.991752 16.719774 17.012461 23.974457 22.431414 21.30607