Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01906 ATGGCGGATCAGGTGAAGCTTCATGGAAATTGGCTAAGTCCATTCAGTAGCAGAGTCATCTGGGCTCTAAAGCTGAAGGGGATCCCGTATGAATACGTAGAAGAAAATGTTGCCGACAAAAGTGCTCTGCTTTTGCACTACAATCCTGTCTACAAGAAGATTCCGGTGCTCGTCCACAGCGGAAAGCCGATCTGCGAGTCCATGATCATCCTCGACTACATCGACGAGACTTGGCCGGAGAACCCGCTCCTGCCTTCGGATCCATTCGAGAGAGCCACGGCTCGCTTCTGGATCAAATTTATAGAGGATAAGAGCCCGGTGCTTTGGGGAGTGTTTTTGGCAGACGGGGAAGACGATAGAGAAAAGGCGAGGAAGGCGACATTGGAAGTACTGCAGACGCTGGAAGAACGGGCGTTCGGGGACGAGAAATTCTTCGGCGGAGATGAGATTAACATGGTGGATTTAGCATACGGGATGCTAGCGCGGTGGATGCCGGTGATCGAAGAGGTTGTGGGCGTAAAACTCCTCGATCCCGACATGTTCCCTCGCCTCCATGCGTTGGCGGAGAACTTCCGGCAAGCTGCCGTCATCAGAGACAATCTGCCTGATCACGACCAGATGGTGCCCTTGTTCAAGATCCGGCGAGAGCAGCTACTCCAAATTGCCGGGAAATGA 675 52.89 MADQVKLHGNWLSPFSSRVIWALKLKGIPYEYVEENVADKSALLLHYNPVYKKIPVLVHSGKPICESMIILDYIDETWPENPLLPSDPFERATARFWIKFIEDKSPVLWGVFLADGEDDREKARKATLEVLQTLEERAFGDEKFFGGDEINMVDLAYGMLARWMPVIEEVVGVKLLDPDMFPRLHALAENFRQAAVIRDNLPDHDQMVPLFKIRREQLLQIAGK 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14201254 14202178 - CmoCh14G019060.1 Cmo14g01906 397172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01906 224 SUPERFAMILY GST C-terminal domain-like 76 216 IPR036282 -
Cmo14g01906 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cmo14g01906 224 SFLD Main (cytGST) 2 219 - -
Cmo14g01906 224 SFLD Main.3: Omega- and Tau-like 2 219 IPR045073 -
Cmo14g01906 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 211 IPR010987 -
Cmo14g01906 224 CDD GST_N_Tau 5 78 - -
Cmo14g01906 224 CDD GST_C_Tau 88 214 IPR045074 GO:0004364|GO:0006749
Cmo14g01906 224 Gene3D Glutaredoxin 1 86 - -
Cmo14g01906 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 3 216 IPR045073 -
Cmo14g01906 224 Gene3D - 87 222 - -
Cmo14g01906 224 Pfam Glutathione S-transferase, C-terminal domain 115 191 IPR004046 -
Cmo14g01906 224 SUPERFAMILY Thioredoxin-like 4 103 IPR036249 -
Cmo14g01906 224 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Cmo14g01906 224 PANTHER GLUTATHIONE S-TRANSFERASE 3 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01906 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207634 354.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01285 Cmo-Chr6:9685452 Cmo14g01906 Cmo-Chr14:14201254 2.08E-87 dispersed
Cmo06g01286 Cmo-Chr6:9691547 Cmo14g01906 Cmo-Chr14:14201254 1.87E-99 dispersed
Cmo14g01906 Cmo-Chr14:14201254 Cmo14g02022 Cmo-Chr14:14807738 4.00E-15 dispersed
Cmo14g01905 Cmo-Chr14:14199702 Cmo14g01906 Cmo-Chr14:14201254 4.91E-98 tandem
Cmo14g01906 Cmo-Chr14:14201254 Cmo14g01907 Cmo-Chr14:14203150 7.73E-68 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g820 . . . . . . . . . . Cma06g01277 . Car06g01098 Car14g01667 . . Cpe03g01559 . . . . . . . . . . . . . . . . . . Lsi05g01793 . . Cme06g00430 . . . . . . . . . . Cmo14g01906 . . . . . . . . . . . . . Cla05g00390 Cam05g0423 Cec05g0428 Cco05g0429 Clacu05g0419 Cmu05g0401 Cre05g0464 . Csa03g01145 Chy06g00409 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01906 Cmo_Chr14 FPKM 11.390476 13.073787 13.259522 12.369499 11.900941 9.34163 11.038483 12.373207 13.02143 13.664988