Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01908 ATGGCGCAAAGTGACTTCCTCCGGCCGCCGATGAAAGCAAGGAAGAAGAAGAAGAAGCGAGAGAGTGTCTCGGATGAACAAGGGCAACAAAATGGAACCCGTAATGAACTTCTCCAAGATCCTTTCGAGGTTTTAGGTCCTGATCTATTAATGACGATACTTAGCTACGTTGATGCACGCAGCGTGGCACTTTCTCTCCTTGTCTCTCGATCTTGGTACGCCGTGGCTTCCAGCGATCGCCTATGGAATTCGAAGACTCGCATTATGAGGGAGGATTTATGTGCTCATGCCTGGCAATTTCACTTCAATAAGGAAGCTCCCATATACTGGCGGAATCTTGATCCGTATTGGCAAGGCAGCCACCCTCTGATGCGCCGATATTTCCATCCCGATGGGAGCCAAACTGCTGATCCTGATGATAGAGTATGGGGTGGGCATGAATGCTGCTTTTCCACGGTTACAAGTTTCATCGGCGATGGGGAGATCAGAGAACACTACGTGAGGATAAACAGATGGCCAAGAATGTTTGTGTCAAGGAATGAAGATTGGAGCTGGAAGATGTCGAATCATTTCACCTCGTACTCAAGCATAGCCGATGCTGACAAGGATAGCGGGACGGGGCCACTCTAA 630 49.05 MAQSDFLRPPMKARKKKKKRESVSDEQGQQNGTRNELLQDPFEVLGPDLLMTILSYVDARSVALSLLVSRSWYAVASSDRLWNSKTRIMREDLCAHAWQFHFNKEAPIYWRNLDPYWQGSHPLMRRYFHPDGSQTADPDDRVWGGHECCFSTVTSFIGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADADKDSGTGPL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14206638 14209727 + CmoCh14G019080.1 Cmo14g01908 397174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01908 209 MobiDBLite consensus disorder prediction 1 38 - -
Cmo14g01908 209 Pfam F-box-like 47 84 IPR001810 GO:0005515
Cmo14g01908 209 Gene3D - 28 83 - -
Cmo14g01908 209 PANTHER F-BOX DOMAIN CONTAINING PROTEIN 85 209 - -
Cmo14g01908 209 PANTHER F-BOX DOMAIN CONTAINING PROTEIN 14 85 - -
Cmo14g01908 209 SUPERFAMILY F-box domain 39 187 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01908 - - - cmax:111479766 388.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01908 Cmo-Chr14:14206638 Cmo06g01285 Cmo-Chr6:9685452 1.07E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g827 . . . Bda08g00017 . . . Bma05g01267 . . Cma06g01276 Cma14g01864 Car06g01097 Car14g01668 . Cpe08g00371 Cpe03g01561 . . . . . . . . . . . . . . . Cone15ag0214 . . Lsi05g01795 . . Cme06g00425 . . . . . . . . . . Cmo14g01908 . . . . . . . . . . . . . Cla05g00385 Cam05g0419 Cec05g0424 Cco05g0424 Clacu05g0415 Cmu05g0397 Cre05g0459 . Csa03g01144 Chy06g00408 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010011 0 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01908 Cmo_Chr14 FPKM 0.0 0.0 9.244071 6.844557 2.017458 1.565986 2.512407 0.647839 1.18311 0.0