Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01918 ATGTGTGGTGAAGTGCTTACTCCGACTCCATTACTGCGTTCTCCAACTTCTTCTTCTTGTTCTTCGTCTTTTTCGTTCTCATTTCTGAAAATTTTTGTCTGCATTTGGACGCAAAAGGAATTGGAGTTTGGAGGAATGGCAATGGCGGAATCTGGAGGGTGGATTCGTTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGGAGCAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTCATAATGAGGCAACCGGGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAGGAGCCTGAGGCTGAGACTCCTGGCAATAAGCATGCCGTGGACAACCCAGACGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGAGAGCTTGGTTTCTTCTCGTGTGGAACCGGCAATCCTATTGATGACTGCTGGCGCTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTAGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATTGGTGGTCGTGATGGTCGATTCTACGTCATCACTGACTCTGGCGACGATGATCCTGTCAACCCAAGGCCTGGCACTTTGCGACATGCCGTTATACAGGATGAACCTCTCTGGATCGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAACAGTTTCAAGACAATTGATGCACGTGGGTCCAACGTGCATATTGCTAATGGAGCTTGCATCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGTTCACCCAATCACGTTGGGTGGAGAACAATTGCTGATGGGGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATTGATCACAATTCCCTCTCTAACTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACCGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTGATGTTATTGGGGCATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTAGTGAACAATGATTATACTCACTGGGAAATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAACAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCAAAAGAGGTGACCAAGAGAGTTGAGACAGCTGAATCTGAGTGGAAAAACTGGAATTGGAGATCAGAAGGAGACCTATTGATGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCAAAATCTTCATCCATGGTTGCTACCATAACAGCCACCGCCGACGTTTCCCATTCAAACACCATCCCAGTTTGCTGTTTGTTGAGACACCCTGAAATCGCTCAACCTCGGCCTGCTTCAACTTCAAAAACACACCATTTGCCATTCAGCAAGCAGGTGCGGAAGCGTTGTTCTTGTGTTCATTTATTCCCCACTTTTCTTCTTCCCAATCCGTTGCTCCTCTTCCTTCAACTATCATTCTTACCCACTATGTCTACTATCTTCTGGTTCTTATAG 1683 46.82 MCGEVLTPTPLLRSPTSSSCSSSFSFSFLKIFVCIWTQKELEFGGMAMAESGGWIRLFLLVVFMLFVGAIARVPKEIPEIHNEATGKLQSSSNSSMAVRLEEPEAETPGNKHAVDNPDEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVITDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGSNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTIADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKNWNWRSEGDLLMNGAFFTPSGAGASASYARASSLGAKSSSMVATITATADVSHSNTIPVCCLLRHPEIAQPRPASTSKTHHLPFSKQVRKRCSCVHLFPTFLLPNPLLLFLQLSFLPTMSTIFWFL 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14249841 14254506 - CmoCh14G019180.1 Cmo14g01918 397184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01918 560 Pfam Pectate lyase 231 409 IPR002022 -
Cmo14g01918 560 MobiDBLite consensus disorder prediction 84 115 - -
Cmo14g01918 560 PANTHER PECTATE LYASE 58 485 - -
Cmo14g01918 560 PRINTS Pollen allergen Amb family signature 394 413 IPR018082 -
Cmo14g01918 560 PRINTS Pollen allergen Amb family signature 292 313 IPR018082 -
Cmo14g01918 560 PRINTS Pollen allergen Amb family signature 372 391 IPR018082 -
Cmo14g01918 560 PRINTS Pollen allergen Amb family signature 228 244 IPR018082 -
Cmo14g01918 560 PRINTS Pollen allergen Amb family signature 168 185 IPR018082 -
Cmo14g01918 560 PRINTS Pollen allergen Amb family signature 465 488 IPR018082 -
Cmo14g01918 560 PRINTS Pollen allergen Amb family signature 436 460 IPR018082 -
Cmo14g01918 560 PRINTS Pollen allergen Amb family signature 192 217 IPR018082 -
Cmo14g01918 560 SUPERFAMILY Pectin lyase-like 122 463 IPR011050 -
Cmo14g01918 560 Gene3D - 145 486 IPR012334 -
Cmo14g01918 560 PANTHER PECTATE LYASE 18-RELATED 58 485 IPR045032 GO:0030570
Cmo14g01918 560 MobiDBLite consensus disorder prediction 1 22 - -
Cmo14g01918 560 SMART amb_all 220 417 IPR002022 -
Cmo14g01918 560 MobiDBLite consensus disorder prediction 84 98 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01918 Cmo17g00119 CCT
Cmo08g01006 Cmo14g01918 CCT
Cmo14g01918 Cmo17g00119 ECH
Cmo08g01006 Cmo14g01918 ECH
Cmo06g01274 Cmo14g01918 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02667 Cmo-Chr4:19398147 Cmo14g01918 Cmo-Chr14:14249841 8.65E-11 dispersed
Cmo13g00799 Cmo-Chr13:7568287 Cmo14g01918 Cmo-Chr14:14249841 0 dispersed
Cmo14g01918 Cmo-Chr14:14249841 Cmo18g00180 Cmo-Chr18:1237313 0 dispersed
Cmo18g00915 Cmo-Chr18:10329109 Cmo14g01918 Cmo-Chr14:14249841 0 dispersed
Cmo14g01918 Cmo-Chr14:14249841 Cmo17g00119 Cmo-Chr17:645851 0 wgd
Cmo14g01918 Cmo-Chr14:14249841 Cmo19g00155 Cmo-Chr19:944910 0 wgd
Cmo14g01918 Cmo-Chr14:14249841 Cmo02g01742 Cmo-Chr2:9932597 0 wgd
Cmo14g01918 Cmo-Chr14:14249841 Cmo06g01274 Cmo-Chr6:9615807 0 wgd
Cmo14g01918 Cmo-Chr14:14249841 Cmo08g01006 Cmo-Chr8:6539045 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01918 K01728 - csv:101218188 825.469