Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g01918 | ATGTGTGGTGAAGTGCTTACTCCGACTCCATTACTGCGTTCTCCAACTTCTTCTTCTTGTTCTTCGTCTTTTTCGTTCTCATTTCTGAAAATTTTTGTCTGCATTTGGACGCAAAAGGAATTGGAGTTTGGAGGAATGGCAATGGCGGAATCTGGAGGGTGGATTCGTTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGGAGCAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTCATAATGAGGCAACCGGGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAGGAGCCTGAGGCTGAGACTCCTGGCAATAAGCATGCCGTGGACAACCCAGACGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGAGAGCTTGGTTTCTTCTCGTGTGGAACCGGCAATCCTATTGATGACTGCTGGCGCTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTAGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATTGGTGGTCGTGATGGTCGATTCTACGTCATCACTGACTCTGGCGACGATGATCCTGTCAACCCAAGGCCTGGCACTTTGCGACATGCCGTTATACAGGATGAACCTCTCTGGATCGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAACAGTTTCAAGACAATTGATGCACGTGGGTCCAACGTGCATATTGCTAATGGAGCTTGCATCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGTTCACCCAATCACGTTGGGTGGAGAACAATTGCTGATGGGGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATTGATCACAATTCCCTCTCTAACTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACCGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTGATGTTATTGGGGCATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTAGTGAACAATGATTATACTCACTGGGAAATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAACAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCAAAAGAGGTGACCAAGAGAGTTGAGACAGCTGAATCTGAGTGGAAAAACTGGAATTGGAGATCAGAAGGAGACCTATTGATGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCAAAATCTTCATCCATGGTTGCTACCATAACAGCCACCGCCGACGTTTCCCATTCAAACACCATCCCAGTTTGCTGTTTGTTGAGACACCCTGAAATCGCTCAACCTCGGCCTGCTTCAACTTCAAAAACACACCATTTGCCATTCAGCAAGCAGGTGCGGAAGCGTTGTTCTTGTGTTCATTTATTCCCCACTTTTCTTCTTCCCAATCCGTTGCTCCTCTTCCTTCAACTATCATTCTTACCCACTATGTCTACTATCTTCTGGTTCTTATAG | 1683 | 46.82 | MCGEVLTPTPLLRSPTSSSCSSSFSFSFLKIFVCIWTQKELEFGGMAMAESGGWIRLFLLVVFMLFVGAIARVPKEIPEIHNEATGKLQSSSNSSMAVRLEEPEAETPGNKHAVDNPDEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVITDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGSNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTIADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKNWNWRSEGDLLMNGAFFTPSGAGASASYARASSLGAKSSSMVATITATADVSHSNTIPVCCLLRHPEIAQPRPASTSKTHHLPFSKQVRKRCSCVHLFPTFLLPNPLLLFLQLSFLPTMSTIFWFL | 560 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 14249841 | 14254506 | - | CmoCh14G019180.1 | Cmo14g01918 | 397184 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g01918 | 560 | Pfam | Pectate lyase | 231 | 409 | IPR002022 | - | |
Cmo14g01918 | 560 | MobiDBLite | consensus disorder prediction | 84 | 115 | - | - | |
Cmo14g01918 | 560 | PANTHER | PECTATE LYASE | 58 | 485 | - | - | |
Cmo14g01918 | 560 | PRINTS | Pollen allergen Amb family signature | 394 | 413 | IPR018082 | - | |
Cmo14g01918 | 560 | PRINTS | Pollen allergen Amb family signature | 292 | 313 | IPR018082 | - | |
Cmo14g01918 | 560 | PRINTS | Pollen allergen Amb family signature | 372 | 391 | IPR018082 | - | |
Cmo14g01918 | 560 | PRINTS | Pollen allergen Amb family signature | 228 | 244 | IPR018082 | - | |
Cmo14g01918 | 560 | PRINTS | Pollen allergen Amb family signature | 168 | 185 | IPR018082 | - | |
Cmo14g01918 | 560 | PRINTS | Pollen allergen Amb family signature | 465 | 488 | IPR018082 | - | |
Cmo14g01918 | 560 | PRINTS | Pollen allergen Amb family signature | 436 | 460 | IPR018082 | - | |
Cmo14g01918 | 560 | PRINTS | Pollen allergen Amb family signature | 192 | 217 | IPR018082 | - | |
Cmo14g01918 | 560 | SUPERFAMILY | Pectin lyase-like | 122 | 463 | IPR011050 | - | |
Cmo14g01918 | 560 | Gene3D | - | 145 | 486 | IPR012334 | - | |
Cmo14g01918 | 560 | PANTHER | PECTATE LYASE 18-RELATED | 58 | 485 | IPR045032 | GO:0030570 | |
Cmo14g01918 | 560 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cmo14g01918 | 560 | SMART | amb_all | 220 | 417 | IPR002022 | - | |
Cmo14g01918 | 560 | MobiDBLite | consensus disorder prediction | 84 | 98 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo14g01918 | Cmo17g00119 | CCT | |
Cmo08g01006 | Cmo14g01918 | CCT | |
Cmo14g01918 | Cmo17g00119 | ECH | |
Cmo08g01006 | Cmo14g01918 | ECH | |
Cmo06g01274 | Cmo14g01918 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02667 | Cmo-Chr4:19398147 | Cmo14g01918 | Cmo-Chr14:14249841 | 8.65E-11 | dispersed | |
Cmo13g00799 | Cmo-Chr13:7568287 | Cmo14g01918 | Cmo-Chr14:14249841 | 0 | dispersed | |
Cmo14g01918 | Cmo-Chr14:14249841 | Cmo18g00180 | Cmo-Chr18:1237313 | 0 | dispersed | |
Cmo18g00915 | Cmo-Chr18:10329109 | Cmo14g01918 | Cmo-Chr14:14249841 | 0 | dispersed | |
Cmo14g01918 | Cmo-Chr14:14249841 | Cmo17g00119 | Cmo-Chr17:645851 | 0 | wgd | |
Cmo14g01918 | Cmo-Chr14:14249841 | Cmo19g00155 | Cmo-Chr19:944910 | 0 | wgd | |
Cmo14g01918 | Cmo-Chr14:14249841 | Cmo02g01742 | Cmo-Chr2:9932597 | 0 | wgd | |
Cmo14g01918 | Cmo-Chr14:14249841 | Cmo06g01274 | Cmo-Chr6:9615807 | 0 | wgd | |
Cmo14g01918 | Cmo-Chr14:14249841 | Cmo08g01006 | Cmo-Chr8:6539045 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g01918 | K01728 | - | csv:101218188 | 825.469 |