Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01921 ATGCAGTACAACAACTTAGGCAGGTCCGGCTTGAAGGTCAGCCAGTTATCATACGGTGCTTGGGTCAGTTTCGGCAATCAACTCGATGTGCGAGAGGCTAAATCTCTTCTTCAATGCTGCCGTGACCACGGCGTCAATTTCTTCGACAACGCTGAAGTCTACGCCAATGGAAGGGCTGAGGAGATCATGGGCCAGGCCATTCGCGAGCTTGGATGGAAGCGCTCTGATATCGTCGTCTCCACCAAAATCTTTTGGGGCGGTTCTGGTCCCAATGACAAGGGGCTTTCCAGAAAACACATCGTTGAAGGTACCAAGGCTTCGCTGAAGCGATTGGATATGGAGTATGTTGATCTTCTCTACTGTCACCGTCCGGATGCGTCGACGCCGATCGAGGAGACGGTAAGGGCGATGAACTATGTGATCGATAAGGGATGGGCGTTTTATTGGGGTACTAGTGAGTGGTCGGCTCAGCAGATCACTGAGGCTTGGGGGATTGCTAATAGATTGGATTTGGTTGGGCCGATTGTGGAGCAGCCGGAGTACAATTTGTTATCTCGTCATAAGGTCGAGTCCGAGTTTCTCCCTCTGTACAGCAACTATGGCATAGGTCTAACGACATGGAGTCCGCTGGCGTCTGGTGTGCTCACTGGAAAATACAACAAGGGAACTATACCACCTGATAGCCGATTTGCTTTGGAAAATTACAAAAATCTTGCAAATCGATCTCTGGTTGATGATGTGTTGAAAAAAGTCAATAACTTGAAACCAATTGCGGATGAGCTAGGAGTGCCATTGTCGCAACTAGCAATTGCATGGTGTGCTTCAAATCCTAACGTCTCATCGGTTATCACCGGCGCCACGAAGGAATCTCAGATTCAGGAGAACATGAAGGCCGTGGACGTGATCCCACTGCTAACTCCAGCAGTAATGGAGAAGATCGAGGCTGCTGTTCAAAGCAAGCCAAAGCGTCCAGAGTCATTTAGGTGA 987 49.34 MQYNNLGRSGLKVSQLSYGAWVSFGNQLDVREAKSLLQCCRDHGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGSGPNDKGLSRKHIVEGTKASLKRLDMEYVDLLYCHRPDASTPIEETVRAMNYVIDKGWAFYWGTSEWSAQQITEAWGIANRLDLVGPIVEQPEYNLLSRHKVESEFLPLYSNYGIGLTTWSPLASGVLTGKYNKGTIPPDSRFALENYKNLANRSLVDDVLKKVNNLKPIADELGVPLSQLAIAWCASNPNVSSVITGATKESQIQENMKAVDVIPLLTPAVMEKIEAAVQSKPKRPESFR 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14267482 14271447 + CmoCh14G019210.1 Cmo14g01921 397187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01921 328 PANTHER POTASSIUM CHANNEL BETA SUBUNIT 1-RELATED 1 328 - -
Cmo14g01921 328 CDD AKR_AKR6C1_2 1 316 - -
Cmo14g01921 328 PANTHER HYPERKINETIC, ISOFORM M 1 328 IPR005399 -
Cmo14g01921 328 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 110 120 IPR005399 -
Cmo14g01921 328 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 161 180 IPR005399 -
Cmo14g01921 328 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 206 212 IPR005399 -
Cmo14g01921 328 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 258 270 IPR005399 -
Cmo14g01921 328 PRINTS KCNAB voltage-gated K+ channel beta subunit family signature 271 284 IPR005399 -
Cmo14g01921 328 Pfam Aldo/keto reductase family 16 316 IPR023210 -
Cmo14g01921 328 Gene3D - 1 323 IPR036812 -
Cmo14g01921 328 SUPERFAMILY NAD(P)-linked oxidoreductase 1 319 IPR036812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01921 - - - csv:101217950 649.818
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00804 Cmo-Chr14:4147522 Cmo14g01921 Cmo-Chr14:14267482 4.87E-32 dispersed
Cmo14g01921 Cmo-Chr14:14267482 Cmo17g00198 Cmo-Chr17:1178392 3.27E-31 dispersed
Cmo14g01921 Cmo-Chr14:14267482 Cmo01g01379 Cmo-Chr1:10848090 1.41E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g849 . . . . . Bpe14g01296 . . . . . . . Car14g01676 Sed02g1471 . Cpe03g01572 Bhi01g00060 Tan10g0556 Cmetu06g1480 . . . Lcy11g1747 . . . . . . . . . . Cone4ag0385 Lsi05g01815 . . Cme06g00408 . . . Bda13g00025 . . Bma02g01213 . . . Cmo14g01921 . . . . . . . . . . . . . Cla05g00370 Cam05g0403 Cec05g0408 Cco05g0408 Clacu05g0398 Cmu05g0383 Cre05g0445 . Csa03g01126 Chy06g00392 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010593 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01921 Cmo_Chr06 FPKM 140.56955 156.538376 138.193726 131.149384 170.382385 186.834793 169.196899 188.998093 201.836258 199.021423
Cmo14g01921 Cmo_Chr08 FPKM 52.377178 51.258106 41.113194 41.199829 46.19891 55.259453 45.602818 103.877777 111.498108 93.284828
Cmo14g01921 Cmo_Chr14 FPKM 202.32193 203.434082 173.064835 157.933212 261.916229 314.806702 240.307999 224.34494 248.752213 218.952576
Cmo14g01921 Cmo_Chr17 FPKM 46.555035 50.302193 59.802299 60.950382 73.252068 74.825813 69.886597 56.279716 58.693043 61.797028