Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01943 AACGAAGCTCCTATGCCGCCAAGCTTCTCCAGCCACCACCACCACCAACACGATCTCTATAACAACCAAGACCAATTCATGAGGTCACGCCCCTTCGAAACCTCCGCCGACAACGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCTACCTCCTCCACCGCTGCAATCCGTAACTTCACCGGACAAGCTCAGCTTCGCTGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAGCTCAGCCTCAACCGGTTCGACGAGGATGATGAACCAGCCGGGATTGACCCAGTCTACTTCTTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAGGAGGCGGCGGCCGGAGAGGAGGAAGCGGCGGAGATGGGAGGCAGAATTGTAGGGGAGTTAGAAGAAGAGGAGAATTTTAGGAACGATAAAAATGGTAATAATAATAATAATAATAATAATAATAATGGTAATAGTAATAAAAGGAAAAGAGGAAGGACGGTGAAGACAAGCGAAGAGGTGGAGAGCCAAAGAATGACGCATATTGCGGTGGAGAGAAATCGAAGGAAGCAGATGAATGAACATCTCCGCGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCCTCCATAATCGGCGGAGCAATCGAGTTCGTGAGGGAGCTGGAGCAGCTTCTCCAGTGTCTAGAATCGCAAAAACGACGTCGTCTTCTAGGAGAGCCACCACTGCAGGCAGGCGACACACCTCCGCCGCAGCAACCGCCATTTCTGCCGCCGGGAGCAGGGAATTTCGGTGGTCACCAAAACGAGGGGCAAATATTGGAAACGACGGCGGAGAGCAAATCGTGCTTAGCTGACGTGGAAGTGAAGGTTTTAGGGTTCGACGCAATGATAAAGATCCTGTCGAGAAGACGACCGGGACAGCTGATTAAAGCCATCGCCGCCCTCGAAGATCTTCAGCTCAATATTCTTCATACAAATATTACCACCATTGAACAGACTGTTCTTTATTCCTTCAACGTCAAGATAGCAAGCGAGTCAAGATTCACAGCAGAGGATATAGCGAGCTCGGTTCAGCAGATCTTCGGTTTTATTCATGCGAACACCGGCATGTGA 1122 50.71 NEAPMPPSFSSHHHHQHDLYNNQDQFMRSRPFETSADNATGILTYFPANPLPPPPLQSVTSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPAGIDPVYFLKFPVLNNERAEEAAAGEEEAAEMGGRIVGELEEEENFRNDKNGNNNNNNNNNNGNSNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPLQAGDTPPPQQPPFLPPGAGNFGGHQNEGQILETTAESKSCLADVEVKVLGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14376752 14378632 + CmoCh14G019430.1 Cmo14g01943 397209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01943 373 MobiDBLite consensus disorder prediction 242 271 - -
Cmo14g01943 373 Pfam Helix-loop-helix DNA-binding domain 174 225 IPR011598 GO:0046983
Cmo14g01943 373 MobiDBLite consensus disorder prediction 137 176 - -
Cmo14g01943 373 MobiDBLite consensus disorder prediction 246 260 - -
Cmo14g01943 373 MobiDBLite consensus disorder prediction 141 158 - -
Cmo14g01943 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 244 IPR036638 GO:0046983
Cmo14g01943 373 PANTHER TRANSCRIPTION FACTOR FAMA 58 372 - -
Cmo14g01943 373 ProSiteProfiles ACT domain profile. 299 373 IPR002912 -
Cmo14g01943 373 Gene3D - 164 239 IPR036638 GO:0046983
Cmo14g01943 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 224 IPR011598 GO:0046983
Cmo14g01943 373 PANTHER TRANSCRIPTION FACTOR FAMA 58 372 IPR044283 GO:0003700|GO:0010052
Cmo14g01943 373 CDD ACT_UUR-ACR-like 299 363 - -
Cmo14g01943 373 SMART finulus 179 230 IPR011598 GO:0046983
Cmo14g01943 373 MobiDBLite consensus disorder prediction 162 176 - -
Cmo14g01943 373 CDD bHLH_AtFAMA_like 176 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01435 Cmo-Chr6:10398681 Cmo14g01943 Cmo-Chr14:14376752 4.90E-51 dispersed
Cmo14g01943 Cmo-Chr14:14376752 Cmo14g02236 Cmo-Chr14:15865527 3.54E-51 dispersed
Cmo17g00078 Cmo-Chr17:418828 Cmo14g01943 Cmo-Chr14:14376752 9.58E-13 dispersed
Cmo14g01943 Cmo-Chr14:14376752 Cmo12g00180 Cmo-Chr12:1176011 4.24E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11075 PF00010 HLH 7.60E-10 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01943 - - cpep:111790068 612.838