Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g01943 | AACGAAGCTCCTATGCCGCCAAGCTTCTCCAGCCACCACCACCACCAACACGATCTCTATAACAACCAAGACCAATTCATGAGGTCACGCCCCTTCGAAACCTCCGCCGACAACGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCTACCTCCTCCACCGCTGCAATCCGTAACTTCACCGGACAAGCTCAGCTTCGCTGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAGCTCAGCCTCAACCGGTTCGACGAGGATGATGAACCAGCCGGGATTGACCCAGTCTACTTCTTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAGGAGGCGGCGGCCGGAGAGGAGGAAGCGGCGGAGATGGGAGGCAGAATTGTAGGGGAGTTAGAAGAAGAGGAGAATTTTAGGAACGATAAAAATGGTAATAATAATAATAATAATAATAATAATAATGGTAATAGTAATAAAAGGAAAAGAGGAAGGACGGTGAAGACAAGCGAAGAGGTGGAGAGCCAAAGAATGACGCATATTGCGGTGGAGAGAAATCGAAGGAAGCAGATGAATGAACATCTCCGCGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCCTCCATAATCGGCGGAGCAATCGAGTTCGTGAGGGAGCTGGAGCAGCTTCTCCAGTGTCTAGAATCGCAAAAACGACGTCGTCTTCTAGGAGAGCCACCACTGCAGGCAGGCGACACACCTCCGCCGCAGCAACCGCCATTTCTGCCGCCGGGAGCAGGGAATTTCGGTGGTCACCAAAACGAGGGGCAAATATTGGAAACGACGGCGGAGAGCAAATCGTGCTTAGCTGACGTGGAAGTGAAGGTTTTAGGGTTCGACGCAATGATAAAGATCCTGTCGAGAAGACGACCGGGACAGCTGATTAAAGCCATCGCCGCCCTCGAAGATCTTCAGCTCAATATTCTTCATACAAATATTACCACCATTGAACAGACTGTTCTTTATTCCTTCAACGTCAAGATAGCAAGCGAGTCAAGATTCACAGCAGAGGATATAGCGAGCTCGGTTCAGCAGATCTTCGGTTTTATTCATGCGAACACCGGCATGTGA | 1122 | 50.71 | NEAPMPPSFSSHHHHQHDLYNNQDQFMRSRPFETSADNATGILTYFPANPLPPPPLQSVTSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPAGIDPVYFLKFPVLNNERAEEAAAGEEEAAEMGGRIVGELEEEENFRNDKNGNNNNNNNNNNGNSNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPLQAGDTPPPQQPPFLPPGAGNFGGHQNEGQILETTAESKSCLADVEVKVLGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 14376752 | 14378632 | + | CmoCh14G019430.1 | Cmo14g01943 | 397209 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g01943 | 373 | MobiDBLite | consensus disorder prediction | 242 | 271 | - | - | |
Cmo14g01943 | 373 | Pfam | Helix-loop-helix DNA-binding domain | 174 | 225 | IPR011598 | GO:0046983 | |
Cmo14g01943 | 373 | MobiDBLite | consensus disorder prediction | 137 | 176 | - | - | |
Cmo14g01943 | 373 | MobiDBLite | consensus disorder prediction | 246 | 260 | - | - | |
Cmo14g01943 | 373 | MobiDBLite | consensus disorder prediction | 141 | 158 | - | - | |
Cmo14g01943 | 373 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 173 | 244 | IPR036638 | GO:0046983 | |
Cmo14g01943 | 373 | PANTHER | TRANSCRIPTION FACTOR FAMA | 58 | 372 | - | - | |
Cmo14g01943 | 373 | ProSiteProfiles | ACT domain profile. | 299 | 373 | IPR002912 | - | |
Cmo14g01943 | 373 | Gene3D | - | 164 | 239 | IPR036638 | GO:0046983 | |
Cmo14g01943 | 373 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 173 | 224 | IPR011598 | GO:0046983 | |
Cmo14g01943 | 373 | PANTHER | TRANSCRIPTION FACTOR FAMA | 58 | 372 | IPR044283 | GO:0003700|GO:0010052 | |
Cmo14g01943 | 373 | CDD | ACT_UUR-ACR-like | 299 | 363 | - | - | |
Cmo14g01943 | 373 | SMART | finulus | 179 | 230 | IPR011598 | GO:0046983 | |
Cmo14g01943 | 373 | MobiDBLite | consensus disorder prediction | 162 | 176 | - | - | |
Cmo14g01943 | 373 | CDD | bHLH_AtFAMA_like | 176 | 244 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01435 | Cmo-Chr6:10398681 | Cmo14g01943 | Cmo-Chr14:14376752 | 4.90E-51 | dispersed | |
Cmo14g01943 | Cmo-Chr14:14376752 | Cmo14g02236 | Cmo-Chr14:15865527 | 3.54E-51 | dispersed | |
Cmo17g00078 | Cmo-Chr17:418828 | Cmo14g01943 | Cmo-Chr14:14376752 | 9.58E-13 | dispersed | |
Cmo14g01943 | Cmo-Chr14:14376752 | Cmo12g00180 | Cmo-Chr12:1176011 | 4.24E-50 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11075 | PF00010 | HLH | 7.60E-10 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g01943 | - | - | cpep:111790068 | 612.838 |