Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01946 ATGTACTCTGTCATTCCGGCGCTGCCGATGGACGGCGGCGGCGGCGGAAAGTTTCAGGGTTCTCTAGATGGAACGAATCTTCCTGGAGATGCTTGTTTGGTTCTCACGTCGGATCCCAAGCCACGCCTCCGATGGACGGCGGAGCTCCATGAGCGATTCGTCGACGCCGTCACTCAGCTCGGCGGCTCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGCCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACGGAGAACTCGAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCGTCATCATCGCCATCATCGAAAATAATAGCTCGAGATTTGAACGATAGTTTCCAAGTCACGGAGGCGTTACGAGCACAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTGCAGCGTCGACTTCAACTTCGCATTGAAGCACAAGGAAAATACTTGCAGTCGATACTCGAGCGGGCGTGTCGAGCATTGAGCGATCAGGCTGCAGCATCTGCTGGACTCGAAGCTGCACGAGAAGAGCTCTCTGAACTTGCAATGAAAGTAGCCAATGAGTCTAAAGACATAGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCCAAAGGCTCCTACGGTTATGCCTCGAGTAGGCGATTGCTCGATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTACCACCGGAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCAATGGCGCTCGAGGGCAATGCTCGACGCGACGTCGAATGGATGAGCTGCTCTGTTGTCAAAGAAACCCATAATGGCATCTCCACTTTAGACCAAAGCGAAACCCGTTCCATTTGTCTTCTCTCCGTTGCTCTTTTGTTTCCTATTTCCTCCGCCGAACTTCAGACGAGCTTTCTTCTCAGTGTTTCCATGGAAGATTCATCTGGCACACATTGA 1071 50.33 MYSVIPALPMDGGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGSDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSKIIARDLNDSFQVTEALRAQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILERACRALSDQAAASAGLEAAREELSELAMKVANESKDIAPLETQKVLPFSELAAALENPKAPTVMPRVGDCSMDSCLTSAGSPVSPIGVGSTTTGMKRPRPVFSHGDSMALEGNARRDVEWMSCSVVKETHNGISTLDQSETRSICLLSVALLFPISSAELQTSFLLSVSMEDSSGTH 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14393688 14400483 + CmoCh14G019460.1 Cmo14g01946 397212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01946 356 MobiDBLite consensus disorder prediction 265 286 - -
Cmo14g01946 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 300 IPR044848 GO:0003700
Cmo14g01946 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 97 IPR017930 -
Cmo14g01946 356 PANTHER PROTEIN PHR1-LIKE 2 1 300 - -
Cmo14g01946 356 Coils Coil 140 160 - -
Cmo14g01946 356 MobiDBLite consensus disorder prediction 105 127 - -
Cmo14g01946 356 Pfam MYB-CC type transfactor, LHEQLE motif 138 183 IPR025756 -
Cmo14g01946 356 Gene3D - 39 97 - -
Cmo14g01946 356 Coils Coil 195 215 - -
Cmo14g01946 356 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 40 95 IPR006447 GO:0003677
Cmo14g01946 356 SUPERFAMILY Homeodomain-like 40 97 IPR009057 -
Cmo14g01946 356 Pfam Myb-like DNA-binding domain 43 93 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01253 Cmo14g01946 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00367 Cmo-Chr7:1675620 Cmo14g01946 Cmo-Chr14:14393688 2.52E-63 dispersed
Cmo14g01154 Cmo-Chr14:9041919 Cmo14g01946 Cmo-Chr14:14393688 5.31E-57 dispersed
Cmo14g01946 Cmo-Chr14:14393688 Cmo19g01150 Cmo-Chr19:9659420 5.03E-68 dispersed
Cmo14g01946 Cmo-Chr14:14393688 Cmo06g01253 Cmo-Chr6:9468323 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11076 PF00249 Myb_DNA-binding 1.30E-07 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01946 - - csv:101213244 502.286