Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g01949 ATGGGGAAGAAAGTTAAGAAGAAGAACAACCGAGCCCCTCTGAAAGAGAAGCGGGTATCTTCAAGTTCACCGAGGAAGGTGCCCCAGCGAAGCAGCCCAACGGTGGAGATTGCTGTTGAGGATGTGTCAGTTGTTAAGGAGAGAAGCCAATGCCAGCACCTTGATAAATGCTTTAATTTCAAAGAGTTATCATCTAAACTTGCGTCCTCGGAACCTATTAGCTGTGAAGATTGTCAAGACAGTTCAGCTGATAGAAGGGGGAGTAAGGGGAAGGCTAAACATGGGAAGAAAAAGGGGGGAACTTCCGTGGATGTAAAACCTGATGCCAAAGCAATTTGGATTTGTTTGCAGTGTGGGCATTATGCTTGTGGAGGTATTGGACTTCCTACCAACTCTCAGATTCATGCCGTTCGACATGTCAGGCAAACTCGACACCCTGTGGTGATTCAGTTTGAAAACCCGCAGCTTCGATGGTGTTTCTCTTGCAACAAATTACTTCCAGTAGAGAAAACTGATGAGAATGGTGAACAAAATGATGGCTTGTCTAATGTGGTGAAATTAATTAGGGATCGGTTGATCAAAGCCTCGCCTGTGGACATTGAGAACACATGGCATGCAAGCAGTGAAGTTACAGCTGCAACTAAATCAGAATGTTCAATGTTAAGTGATCTGGAGGGAAGAAATCATTATGTTGTAAAAGGATTGATTAATCTAGGTAACACTTGTTTTTTCAATTCAATCCTTCAAAATCTATTGGCCATTGATATGTTGAGAGATCATTTTATGAAATTGGAAGAATGTGTTGGACCTCTAACTATAGCCTTGAAGAAGATCTTTATAGAAGCAAGAATGGAAGGTAGAATGAAAGGTTCAATAAACCCAAGATCGGTTTTTGGCTGCATCTCTTCCAAAGCCCCTCAGTTCAAAGGATATGAGCAACACGACAGTCATGAATTGCTTCATGCCCTGCTTGATGGATTGTCTACTGAAGAGCTGACTTCGAGGAAGATGACAAAGTCTAAGGAAGAGAGAATGTCTGGAAATCCCACTCCTTCTTTTGTTGATGAGATGTTTGGGGGGGAAATATCAAGTGCTGTATGTTGCAAAGAATGTGGCCACACATCAACAGTTTATGAACCATTTCTCAATCTTTCTCTTCCCGTTCCAATGAAGAAACCTCTGGCCAAAAAGGTCCAACCAGTCTCTCGGGCAAAGAAGACAAAAGTGCCACCTAAGAGTAGTGGAAAGACGATTCGTAAAACTGGCAAGCCTTCAGATGTTGTCCCAGTTCAAATTGCCTCGCTCCCATCATCCAGTAATGAGCTTTCCCTTGCATCAGAGGCCAGCGCCGCCAGTAGCACAACTACCATCACGGAGAAGACTTTAAGTTCTCAGAATGTCTCAGATGTTAAAGAGCCTGAAAAAGAAGTTTTGATTGAGAATGGAGGAGAATGTGCTTCAGATAATTTGACGTGGATGGATTTCCTTGGACCAGAACTAACTGTCGAAAATTGTGATATTTCCACTACTCAGGAGTCTGAAAATAACGTCGAAGTATTTATCAGTGACGATTCACAAAGCATCTCTGGGTCGGGTATGCAAGTGTCAACCCTTCACAATGAACCCAATCAAGGACCAGATTTTTCAGTGAATTCATGGGATGAATCCCCTTTACAGGTTCAAGCCTCTGAAGTTTTGCTGCTCCCTTACAAGGAAGAGAGCTCCACTGCTGAAGTAGCAAAAGCAGATGATCAGGCTTCCTCATCAATTTTGGGATGTGCTCAAGATGATTTTGAGGGATTTGGCCTTGGTGATATGTTTGATGAGCCTGAAATCCCCATAGGGCCCATTGCGAGGCCCTCCGCCGCAAATGAAGTTGCAGAGAGTAGTTTTGTTAGCGAGTCTGAGCCTGAGGAAGTTGATAATACTAATGCTCCCGTCTCTGTGGAGAGTTGTCTAACTTATTTCACAAAGCCAGAACTTCTGTCCAACGAAAATGGATATAACTGTGAGAAATGCTTAAAAAGGCTACAACAACAAAGGTTGGAAATGAAGAAGCAATCAAAAGTTGCTCGCAAAGCTGTAGCAAATGGATATCAAACTGATGTAGGGGGTGATATATCTAGTTTCAACGTGGACTCTTCAGTTGAAGTAAAAAATCAAAGAAATATGAACTTAATAAATGGTTCTTTAAGTCATAGTAGCGGTGAAAGCTTGAATTTGAAAGAAAATGCAGATTGCTCCAGTCGAGATAGAACAAAACCTGTCGATTGCCAGAAAGGCAAGATGGATTCTCTTGTTTTGAATGAAGATGAAGCTAAGGTTGACAAAGATATGAATCCTGGCCTAGCATATGCTTCAGGTTGTAATAACACCAGCAATCAAGAGAATTCTGATGATAAATCCAGGTCTTATCTTTCCAACGATGATCCTAAAGGCAGGGGACTTGCAAAAACTAATATTGAGCCCTTGAGTTCACAAATATCTGCCGAGAACCAACCAGAAAAAAGTGAGGATTGTGAGATGAATTCTGATTCAACAATTGTGAATGTGAAAAGAGATGCAACAAAGAGGTTTCTCATTCACAAGGCCCCTCCTATCTTGACAGTTCATATAAAGAGGTTCAGTCCGGATGCTCGGGGTCGTTATAGTAAATTGAACGGCCACGTCAAATTCAAAGAAACAATTGATCTCAAACCATACATGGATACTAGGTGTGCAGATAGGGACAAGTGTAAATATCGGTTGGTCGGGGTCGTGGAGCACTCGGGATCTATGAGAGGAGGCCATTATGTTGCATACGTGAGAGGGGGCAACAGGAAGAGGAGGAATGGGGAAGCTGAAGAAGATGCTTCTGTTTGGTATTATGCAAGTGACGCCTGCGTAAACGAGGTTAGCCTGGACCGGGTTCTTGGCTGCGAGGCGTACATCCTATTTTATGAGATAACAGGTCAAATCTTTGGCTAA 2967 42.6 MGKKVKKKNNRAPLKEKRVSSSSPRKVPQRSSPTVEIAVEDVSVVKERSQCQHLDKCFNFKELSSKLASSEPISCEDCQDSSADRRGSKGKAKHGKKKGGTSVDVKPDAKAIWICLQCGHYACGGIGLPTNSQIHAVRHVRQTRHPVVIQFENPQLRWCFSCNKLLPVEKTDENGEQNDGLSNVVKLIRDRLIKASPVDIENTWHASSEVTAATKSECSMLSDLEGRNHYVVKGLINLGNTCFFNSILQNLLAIDMLRDHFMKLEECVGPLTIALKKIFIEARMEGRMKGSINPRSVFGCISSKAPQFKGYEQHDSHELLHALLDGLSTEELTSRKMTKSKEERMSGNPTPSFVDEMFGGEISSAVCCKECGHTSTVYEPFLNLSLPVPMKKPLAKKVQPVSRAKKTKVPPKSSGKTIRKTGKPSDVVPVQIASLPSSSNELSLASEASAASSTTTITEKTLSSQNVSDVKEPEKEVLIENGGECASDNLTWMDFLGPELTVENCDISTTQESENNVEVFISDDSQSISGSGMQVSTLHNEPNQGPDFSVNSWDESPLQVQASEVLLLPYKEESSTAEVAKADDQASSSILGCAQDDFEGFGLGDMFDEPEIPIGPIARPSAANEVAESSFVSESEPEEVDNTNAPVSVESCLTYFTKPELLSNENGYNCEKCLKRLQQQRLEMKKQSKVARKAVANGYQTDVGGDISSFNVDSSVEVKNQRNMNLINGSLSHSSGESLNLKENADCSSRDRTKPVDCQKGKMDSLVLNEDEAKVDKDMNPGLAYASGCNNTSNQENSDDKSRSYLSNDDPKGRGLAKTNIEPLSSQISAENQPEKSEDCEMNSDSTIVNVKRDATKRFLIHKAPPILTVHIKRFSPDARGRYSKLNGHVKFKETIDLKPYMDTRCADRDKCKYRLVGVVEHSGSMRGGHYVAYVRGGNRKRRNGEAEEDASVWYYASDACVNEVSLDRVLGCEAYILFYEITGQIFG 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14407766 14412996 + CmoCh14G019490.1 Cmo14g01949 397215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g01949 988 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 981 - -
Cmo14g01949 988 MobiDBLite consensus disorder prediction 394 427 - -
Cmo14g01949 988 Pfam Ubiquitin carboxyl-terminal hydrolase 234 980 IPR001394 GO:0004843|GO:0016579
Cmo14g01949 988 Pfam Zn-finger in ubiquitin-hydrolases and other protein 75 166 IPR001607 GO:0008270
Cmo14g01949 988 ProSiteProfiles Zinc finger UBP-type profile. 49 192 IPR001607 GO:0008270
Cmo14g01949 988 CDD Peptidase_C19K 824 981 - -
Cmo14g01949 988 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 981 - -
Cmo14g01949 988 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 186 IPR013083 -
Cmo14g01949 988 MobiDBLite consensus disorder prediction 446 468 - -
Cmo14g01949 988 SMART Zf_UBP_1 103 156 IPR001607 GO:0008270
Cmo14g01949 988 MobiDBLite consensus disorder prediction 446 473 - -
Cmo14g01949 988 MobiDBLite consensus disorder prediction 74 103 - -
Cmo14g01949 988 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 914 931 IPR018200 GO:0004843|GO:0006511
Cmo14g01949 988 Gene3D Cysteine proteinases 714 983 - -
Cmo14g01949 988 Coils Coil 674 694 - -
Cmo14g01949 988 MobiDBLite consensus disorder prediction 727 743 - -
Cmo14g01949 988 MobiDBLite consensus disorder prediction 744 778 - -
Cmo14g01949 988 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 233 983 IPR028889 -
Cmo14g01949 988 SUPERFAMILY Cysteine proteinases 232 981 IPR038765 -
Cmo14g01949 988 MobiDBLite consensus disorder prediction 398 413 - -
Cmo14g01949 988 MobiDBLite consensus disorder prediction 727 845 - -
Cmo14g01949 988 Gene3D Cysteine proteinases 229 694 - -
Cmo14g01949 988 SUPERFAMILY RING/U-box 49 165 - -
Cmo14g01949 988 MobiDBLite consensus disorder prediction 785 801 - -
Cmo14g01949 988 MobiDBLite consensus disorder prediction 1 34 - -
Cmo14g01949 988 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 234 249 IPR018200 GO:0004843|GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g01949 K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] - csv:101204267 1576.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01250 Cmo14g01949 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01949 Cmo-Chr14:14407766 Cmo20g00156 Cmo-Chr20:772379 6.87E-12 dispersed
Cmo09g01133 Cmo-Chr9:6528289 Cmo14g01949 Cmo-Chr14:14407766 4.11E-14 transposed
Cmo14g01949 Cmo-Chr14:14407766 Cmo06g01250 Cmo-Chr6:9451992 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g908 . . . . . . . . . . Cma06g01231 Cma14g01897 . Car14g01712 . Cpe08g00400 Cpe03g01596 Bhi01g00227 Tan10g0516 . . Hepe05g1764 . . . . . . . . . . . Cone7ag0396 . Lsi05g01845 . . . . . . . . . . . . Cmo06g01250 Cmo14g01949 . . . . . . . . . . . . . . . . . . . . . Csa03g01091 Chy06g00361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g01949 Cmo_Chr14 FPKM 49.526905 54.263912 34.21048 35.331596 15.660221 16.89069 18.925875 60.888161 65.793419 59.958511