Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02022 ATGGGAGAAGAACTGAAGCTGTTGGTTAGAACGTCGAGTCCGTACACTCTGAGAATAGTATGGGCGCTGAAGTTGAAAGGGTTGGAATACGACACCGTTTACGAAGATCATAGTCTGGCCAACGAGAGTTCGCTGCTTTTGGAGGAGATTAACAGTCCGATCCACAAGAACCTTCCTGTATTGCTCATCCATGGCGGAAAACCGATCGCCGAACCGCTCGTCATCCTCGAATACATCGACGAGGGCATGTTTGCAAAAGACACAAAAGCACAGGGACCAAGGAGCAATTTCCCAAAACTTGAAGAGCGTGCCGTTCATAAAAGGGGCCAACCCAGAGAACTGAAAGCGCGATTACAGAGCAGAGGAAGTGAGCTAAGAAGGGAGATGGGAGAAGAACTGAAGCTATTCAGAACGTGGTCGACTCCATTCGCTCTGAGAATAGTATGGGCGTTGAAGTTGAAAGGATTAGAATACGACACCGTTTACGAAGATCTGGCCAACAAGAGTCCCCAGCTTCTGGAGTACAACCCGGTCCACAAGAAGGTCCCGGTTCTGGTCCATGGCGGAAAACCGGTCGCTGAATCGCTTGTCATTCTGGAATACATCGATGAAATGTGGAAGCAAAATCCATTGCTGCCTCAGGATCCTTACCAGAGAGCTGCTGCTCGCTTTTGGGCCAAATTTGGGGATGAGAAGGTTTTGGAATCTATAAGGAAAGCGCTGATGAACCAAGGGAAAGTGAGAGAGGAAGGTGTAGAAGAAGCCTTGGAGAATATGAAGCATTTGGAAGGAGAGTTGGAGGGAAAGAGGTTCTTTGGAGGGGAAGCCATTGGGTTCGTGGACATTGCACTTGGATGGCTTGCAAACATAGTGAGTGTAATGGAGGAAGTGATTGGAGTTGAGCTCATAACCGAACAAAGGTTTCCCCTGCTGTGGAAATGGATACACGAATTTGCTGCTGCGCCTATCATAAATGAAACCTGGCCGCCTAGAGACAAGCTTGTCGCCAGGTACCAAGCAATTGATCAAAGCTCTATGAGTAAACAAGCGTAA 1053 48.15 MGEELKLLVRTSSPYTLRIVWALKLKGLEYDTVYEDHSLANESSLLLEEINSPIHKNLPVLLIHGGKPIAEPLVILEYIDEGMFAKDTKAQGPRSNFPKLEERAVHKRGQPRELKARLQSRGSELRREMGEELKLFRTWSTPFALRIVWALKLKGLEYDTVYEDLANKSPQLLEYNPVHKKVPVLVHGGKPVAESLVILEYIDEMWKQNPLLPQDPYQRAAARFWAKFGDEKVLESIRKALMNQGKVREEGVEEALENMKHLEGELEGKRFFGGEAIGFVDIALGWLANIVSVMEEVIGVELITEQRFPLLWKWIHEFAAAPIINETWPPRDKLVARYQAIDQSSMSKQA 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14807738 14812677 + CmoCh14G020220.1 Cmo14g02022 397288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02022 350 SUPERFAMILY GST C-terminal domain-like 204 342 IPR036282 -
Cmo14g02022 350 CDD GST_N_Tau 133 206 - -
Cmo14g02022 350 Gene3D Glutaredoxin 1 89 - -
Cmo14g02022 350 SFLD Main.3: Omega- and Tau-like 129 348 IPR045073 -
Cmo14g02022 350 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 131 210 IPR004045 -
Cmo14g02022 350 PANTHER S-TRANSFERASE, PUTATIVE-RELATED 1 83 - -
Cmo14g02022 350 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 83 IPR045073 -
Cmo14g02022 350 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 215 341 IPR010987 -
Cmo14g02022 350 CDD GST_C_Tau 216 341 IPR045074 GO:0004364|GO:0006749
Cmo14g02022 350 Pfam Glutathione S-transferase, C-terminal domain 246 322 IPR004046 -
Cmo14g02022 350 SUPERFAMILY Thioredoxin-like 4 81 IPR036249 -
Cmo14g02022 350 Pfam Glutathione S-transferase, N-terminal domain 132 204 IPR004045 -
Cmo14g02022 350 Pfam Glutathione S-transferase, N-terminal domain 5 81 IPR004045 -
Cmo14g02022 350 Gene3D Glutaredoxin 127 211 - -
Cmo14g02022 350 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 129 342 IPR045073 -
Cmo14g02022 350 SUPERFAMILY Thioredoxin-like 133 232 IPR036249 -
Cmo14g02022 350 Gene3D - 212 349 - -
Cmo14g02022 350 PANTHER S-TRANSFERASE, PUTATIVE-RELATED 129 342 - -
Cmo14g02022 350 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 87 IPR004045 -
Cmo14g02022 350 SFLD Main (cytGST) 129 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02022 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101219529 392.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01072 Cmo-Chr7:5533132 Cmo14g02022 Cmo-Chr14:14807738 8.97E-13 dispersed
Cmo07g01074 Cmo-Chr7:5557747 Cmo14g02022 Cmo-Chr14:14807738 2.84E-12 dispersed
Cmo07g01075 Cmo-Chr7:5586762 Cmo14g02022 Cmo-Chr14:14807738 9.25E-13 dispersed
Cmo13g01183 Cmo-Chr13:9401517 Cmo14g02022 Cmo-Chr14:14807738 3.29E-11 dispersed
Cmo14g01905 Cmo-Chr14:14199702 Cmo14g02022 Cmo-Chr14:14807738 3.80E-17 dispersed
Cmo14g01906 Cmo-Chr14:14201254 Cmo14g02022 Cmo-Chr14:14807738 4.00E-15 dispersed
Cmo14g02022 Cmo-Chr14:14807738 Cmo06g01186 Cmo-Chr6:9033267 5.82E-25 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g01082 CST 1 209 Glutathione S-transferase Gene Family AT4G02520 59.4 6.6e-65 244.6
Cmo08g00403 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 2.5e-64 242.7
Cmo08g00404 CST 5 221 Glutathione S-transferase Gene Family AT4G02520 54.5 1.0e-57 220.7
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT2G02930 60.6 2.1e-66 249.6
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.7 8.6e-65 244.2
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT2G02930 55.2 7.8e-58 221.1
Cmo08g00403 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 9.1e-61 231.1
Cmo17g01082 CST 3 206 Glutathione S-transferase Gene Family AT1G02950 55.1 1.4e-58 223.8
Cmo08g00404 CST 6 218 Glutathione S-transferase Gene Family AT1G02950 51.9 2.0e-55 213.4
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT1G02930 58.6 2.9e-65 245.7
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT1G02930 59.0 8.5e-65 244.2
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT1G02930 53.2 1.7e-57 219.9
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT1G02920 60.5 3.4e-66 248.8
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT1G02920 58.6 7.7e-66 247.7
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT1G02920 54.6 7.0e-59 224.6
Cmo08g00403 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 1.9e-69 260.0
Cmo17g01082 CST 1 214 Glutathione S-transferase Gene Family AT2G47730 57.7 1.1e-64 244.2
Cmo08g00404 CST 4 225 Glutathione S-transferase Gene Family AT2G47730 53.4 3.0e-59 226.1
Cmo03g00394 . 3 216 Glutathione S-transferase Gene Family AT3G09270 52.1 8.2e-66 247.7
Cmo03g00395 . 3 213 Glutathione S-transferase Gene Family AT3G09270 52.4 3.8e-63 238.8
Cmo07g01074 . 3 213 Glutathione S-transferase Gene Family AT3G09270 51.9 2.2e-58 223.0
Cmo04g00338 . 4 219 Glutathione S-transferase Gene Family AT1G69930 51.2 2.7e-59 226.1
Cmo04g00338 . 1 216 Glutathione S-transferase Gene Family AT1G59670 52.1 2.1e-56 216.5
Cmo04g00338 . 1 216 Glutathione S-transferase Gene Family AT1G59700 54.3 8.3e-61 231.1
Cmo04g00338 . 6 223 Glutathione S-transferase Gene Family AT1G10370 60.9 1.7e-74 276.6
Cmo04g00339 . 6 216 Glutathione S-transferase Gene Family AT1G10370 55.5 3.2e-65 245.7
Cmo04g00338 . 5 223 Glutathione S-transferase Gene Family AT1G10360 58.4 1.1e-70 263.8
Cmo04g00339 . 5 216 Glutathione S-transferase Gene Family AT1G10360 52.0 4.7e-61 231.9
Cmo04g00688 . 1 205 Glutathione S-transferase Gene Family AT1G78380 72.2 1.6e-85 313.2
Cmo16g00499 . 1 187 Glutathione S-transferase Gene Family AT1G78380 61.5 2.2e-71 266.2
Cmo16g00500 . 1 105 Glutathione S-transferase Gene Family AT1G78380 66.7 1.3e-36 150.6
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G78370 65.5 7.0e-78 287.7
Cmo16g00499 . 1 188 Glutathione S-transferase Gene Family AT1G78370 58.9 5.9e-69 258.1
Cmo04g00687 . 8 213 Glutathione S-transferase Gene Family AT1G78370 51.5 1.8e-57 219.9
Cmo04g00688 . 1 212 Glutathione S-transferase Gene Family AT1G78340 62.0 1.1e-75 280.4
Cmo16g00499 . 1 189 Glutathione S-transferase Gene Family AT1G78340 61.4 4.8e-71 265.0
Cmo16g00500 . 1 96 Glutathione S-transferase Gene Family AT1G78340 68.8 3.5e-37 152.5
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G78320 52.9 3.0e-56 215.7
Cmo16g00499 . 1 184 Glutathione S-transferase Gene Family AT1G78320 50.7 4.2e-50 195.3
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G17180 66.0 4.0e-81 298.5
Cmo16g00499 . 1 187 Glutathione S-transferase Gene Family AT1G17180 63.9 4.3e-75 278.5
Cmo14g02022 . 129 284 Glutathione S-transferase Gene Family AT1G17180 51.6 1.3e-39 160.6
Cmo06g01186 . 8 162 Glutathione S-transferase Gene Family AT1G17180 50.6 1.2e-37 154.1
Cmo16g00500 . 1 105 Glutathione S-transferase Gene Family AT1G17180 64.8 2.1e-37 153.3
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G17190 57.5 7.8e-69 257.7
Cmo16g00499 . 3 190 Glutathione S-transferase Gene Family AT1G17190 53.6 1.3e-63 240.4
Cmo04g00688 . 3 205 Glutathione S-transferase Gene Family AT3G43800 55.1 2.4e-65 246.1
Cmo04g00688 . 3 205 Glutathione S-transferase Gene Family AT1G53680 58.0 1.2e-64 243.8
Cmo04g00687 . 4 220 Glutathione S-transferase Gene Family AT1G53680 51.8 4.4e-59 225.3
Cmo16g00499 . 4 185 Glutathione S-transferase Gene Family AT1G53680 52.7 3.1e-57 219.2
Cmo02g00647 . 51 221 Glutathione S-transferase Gene Family AT2G02390 65.5 6.8e-61 231.1
Cmo02g00645 . 50 217 Glutathione S-transferase Gene Family AT2G02390 66.1 2.9e-59 225.7
Cmo06g01161 . 60 226 Glutathione S-transferase Gene Family AT2G02390 53.9 2.3e-48 189.5
Cmo02g00647 . 10 220 Glutathione S-transferase Gene Family AT2G02380 62.6 4.8e-74 275.0
Cmo02g00645 . 9 215 Glutathione S-transferase Gene Family AT2G02380 61.4 9.4e-70 260.8
Cmo06g01161 . 17 225 Glutathione S-transferase Gene Family AT2G02380 55.0 1.4e-62 236.9
Cmo16g00640 . 1 237 Glutathione S-transferase Gene Family AT5G41210 68.8 9.5e-92 334.0
Cmo04g00779 . 1 229 Glutathione S-transferase Gene Family AT5G41210 69.4 5.8e-89 324.7
Cmo16g00640 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.5 1.1e-88 325.1
Cmo04g00779 . 1 229 Glutathione S-transferase Gene Family AT5G41240 67.7 1.2e-84 311.6
Cmo06g00337 . 10 236 Glutathione S-transferase Gene Family AT5G02780 68.9 3.6e-88 322.0
Cmo06g00338 . 4 232 Glutathione S-transferase Gene Family AT5G02780 68.0 9.3e-84 307.4
Cmo04g01303 . 76 295 Glutathione S-transferase Gene Family AT5G02780 64.4 9.0e-79 290.8
Cmo04g01303 . 39 293 Glutathione S-transferase Gene Family AT3G55040 59.0 2.1e-82 303.1
Cmo06g00337 . 5 237 Glutathione S-transferase Gene Family AT3G55040 62.2 6.9e-81 298.1
Cmo06g00338 . 3 230 Glutathione S-transferase Gene Family AT3G55040 57.2 1.1e-75 280.8
Cmo06g00337 . 10 236 Glutathione S-transferase Gene Family AT5G02790 69.2 5.4e-92 334.7
Cmo06g00338 . 4 232 Glutathione S-transferase Gene Family AT5G02790 69.1 2.0e-91 332.8
Cmo04g01303 . 62 295 Glutathione S-transferase Gene Family AT5G02790 62.1 8.6e-82 300.8
Cmo04g00243 . 1 211 Glutathione S-transferase Gene Family AT1G19570 67.5 3.9e-81 298.5
Cmo04g01285 . 1 211 Glutathione S-transferase Gene Family AT1G19570 65.1 1.8e-78 289.7
Cmo14g00834 . 66 274 Glutathione S-transferase Gene Family AT1G19570 61.4 7.8e-74 274.2
Cmo04g00242 . 32 242 Glutathione S-transferase Gene Family AT1G19570 62.3 1.6e-71 266.5
Cmo04g00245 . 1 98 Glutathione S-transferase Gene Family AT1G19570 76.5 4.3e-40 162.2
Cmo04g00243 . 256 465 Glutathione S-transferase Gene Family AT1G75270 73.0 2.5e-88 322.4
Cmo04g01285 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.9 1.8e-86 316.2
Cmo04g00242 . 32 243 Glutathione S-transferase Gene Family AT1G75270 65.3 1.3e-76 283.5
Cmo14g00834 . 66 274 Glutathione S-transferase Gene Family AT1G75270 63.3 2.4e-75 279.3
Cmo04g00245 . 1 98 Glutathione S-transferase Gene Family AT1G75270 77.6 1.5e-40 163.7
Cmo14g00834 . 55 276 Glutathione S-transferase Gene Family AT5G16710 77.0 1.2e-100 363.6
Cmo04g00243 . 256 463 Glutathione S-transferase Gene Family AT5G16710 60.1 1.0e-72 270.8
Cmo04g01285 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 1.3e-70 263.8
Cmo04g00242 . 20 241 Glutathione S-transferase Gene Family AT5G16710 52.3 3.4e-63 239.2
Cmo09g00759 CST 1 267 Glutathione S-transferase Gene Family AT1G77290 69.3 2.3e-107 386.0
Cmo01g01417 CST 1 270 Glutathione S-transferase Gene Family AT1G77290 67.8 2.8e-105 379.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004777 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 2 2 1 1 1 2 4 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo14g02022 Cmo_Chr14 FPKM 16.316101 17.518314 11.972382 11.800564 25.407894 23.845114 26.493858 10.794565 9.641298 10.952065