Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02028 ATGGCAGTGATTCATAGCCGTTGGATCCTTATTGTTCTTGTTGTTCTTAATTTTCCGGCCGCCATTTTTAGTTATTCCGAAAAGGAATTAAAAAATTGGTGTAGCCAAACACCATATCCAGCTCCATGCGAGCAATTTATCAAAGCCAAAGCCACCGCCAAACATTCCCCAATCGCCACTAAATCCCATTTCCTTAAACTCTTGGTCGAAACGGCACTCGACGGCGCCGTTTCGGCCCAAAAAACCGCGCTGTCTCTTGGCCCAAAATGCCACAATGGCCGAGAAAAATCAGCATTGACCGACTGCGTTGACCTTTACAATCAAATCATCTCCCGCCTCAACCGCTCCGCCGACCGCTGCTCCTCCGTCGACGCCCAGACTTGGCTCAGCGCCTCCCTCACCGCCCTCGACACCTGCCGGAACAGCCTCCAGGAGCTCGGGGTTTCGGCCTTCGGCTACCCTTTGACGAGCAATAATGTTTCCAAGCTCATTAGCGATGGGTTGTCTGTGAATAAGCCGGCGTCACCCCAGGGGTTTGAGCCAACCATGGCGGAGGGGTTTCCGACGTGGGTTAGGCCCGGTGACCGGAAACTGCTGCAGTCGGGGTCTCCGAGTGCGGATGTGGTGGTGGCGAAGGACGGGTCTGGGAATTTTAAGACCGTGAAGGAGGCGGTCGCCGCCGCGAAAGGCGGCGGGAGATTTGTAATATATGTGAAGGCGGGGGTTTATAGTGAAAACCTTGAGATTAATGCTAAGAATGTCATGTTGATCGGCGACGGAATCGGAAAAACTGTCATCACCGGAAGTAGAAGTGTCGGCGGCGGTTTCACCACGTTTAGATCCGCCACCGTTGCCGTTGATGGAGATGGCTTTATCGCGCGAGATATAACCTTCAGAAACACAGCCGGAGCGGCGAAGCATCAGGCGGTGGCGCTCCGATCGGGGTCCGACCTGTCGGTCTTCTATCGCTGTGGCTTCGAAGGCTATCAAGATACTCTCTACGTCTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACTGTCGATTTCATCTTCGGCAACGCCGCCGTCGTACTCCAAGATTGCAACATCATCGCCCGCGATCCTCCGAATAGGACTATCACAGTCACCGCCCAGGGCCGATCAGATCCGAATCAGAACACCGGAATCTCAATCCATAATAGCCGAATCACGTCCGCCGGCGGCCTCAGCGGCGTCAAAGCCTATTTAGGCCGGCCGTGGAGGCAGTACTCGCGGACAGTTATTATGAAATCGTCGATCGGCGGATTCATCAGTCCGGCCGGGTGGCTAGAATGGAGCGGTAATTTTGCCCTAAATACACTCTATTACGGCGAATATATGAATACCGGTCCGGGAGCTTCGACGGCGAATCGAGTGAAATGGAAGGGCTATCGTGTAATTACCAGTGCGACGGAGGCCTCCAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTACCGAGTACCGGCGTGCCTTTCACCTCCGGCCTCTAG 1530 54.18 MAVIHSRWILIVLVVLNFPAAIFSYSEKELKNWCSQTPYPAPCEQFIKAKATAKHSPIATKSHFLKLLVETALDGAVSAQKTALSLGPKCHNGREKSALTDCVDLYNQIISRLNRSADRCSSVDAQTWLSASLTALDTCRNSLQELGVSAFGYPLTSNNVSKLISDGLSVNKPASPQGFEPTMAEGFPTWVRPGDRKLLQSGSPSADVVVAKDGSGNFKTVKEAVAAAKGGGRFVIYVKAGVYSENLEINAKNVMLIGDGIGKTVITGSRSVGGGFTTFRSATVAVDGDGFIARDITFRNTAGAAKHQAVALRSGSDLSVFYRCGFEGYQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVLQDCNIIARDPPNRTITVTAQGRSDPNQNTGISIHNSRITSAGGLSGVKAYLGRPWRQYSRTVIMKSSIGGFISPAGWLEWSGNFALNTLYYGEYMNTGPGASTANRVKWKGYRVITSATEASKFTVGNFIAGGSWLPSTGVPFTSGL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14842482 14846297 - CmoCh14G020280.1 Cmo14g02028 397294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02028 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 171 IPR035513 -
Cmo14g02028 509 SMART PMEI_2 25 170 IPR006501 GO:0004857
Cmo14g02028 509 SUPERFAMILY Pectin lyase-like 204 508 IPR011050 -
Cmo14g02028 509 Pfam Plant invertase/pectin methylesterase inhibitor 30 167 IPR006501 GO:0004857
Cmo14g02028 509 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Cmo14g02028 509 PANTHER PECTINESTERASE 11 508 - -
Cmo14g02028 509 PANTHER PECTINESTERASE 11 508 - -
Cmo14g02028 509 CDD PMEI-like_3 33 175 - -
Cmo14g02028 509 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 159 IPR006501 GO:0004857
Cmo14g02028 509 Pfam Pectinesterase 207 494 IPR000070 GO:0030599|GO:0042545
Cmo14g02028 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 172 IPR035513 -
Cmo14g02028 509 Gene3D - 202 509 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00349 Cmo-Chr4:1702527 Cmo14g02028 Cmo-Chr14:14842482 2.50E-175 dispersed
Cmo06g01176 Cmo-Chr6:8999851 Cmo14g02028 Cmo-Chr14:14842482 0 dispersed
Cmo14g02028 Cmo-Chr14:14842482 Cmo16g00926 Cmo-Chr16:5729887 1.20E-169 dispersed
Cmo15g01008 Cmo-Chr15:5577017 Cmo14g02028 Cmo-Chr14:14842482 1.27E-164 transposed
Cmo14g02028 Cmo-Chr14:14842482 Cmo06g01175 Cmo-Chr6:8988503 3.84E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02028 K01051 - csv:101217552 873.233