Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02040 ATGGAGGAGAGAGAAGCCATAAATACAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTACCACGTAGCTCCGAGAACCGAGAACCCGCCGCCGGCTAGCGGCGGCGGTGGCGGTTCGCCAACCGTCGCCGCTTCGCCGGTCAGTGTGGGGCTACCCGGAAGTGAAACCACAGGGAAAAAGAAGCGGGGGAGACCTAGAAAGTACGGTCCAGATGGAACGGTAACCATGGCATTGTCACCATTGCCGCTTTCTTCCTCAGCTCCGGGGGCCGGCGGCTTCTCCATCACGAAGCGGGGGAAGGGCCGGCTCGGCGGCTCTGAATTCAAGCACCACAAGAAAATGGGAATGGAATATATAGGAGAATGGAATGCGTGTTCTGTCGGTACTAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGTCCTCGAGCGATCTGTATTCTTTCTGCGAATGGTGTAATTTCCAATGTCACTCTCCGGCAGCCCGATTCTTCAGGTGGTACTTTAACATATGAGGGTCGTTTCGAGATACTTTCATTGTCTGGATCGTTCATGCCTACTGAAAATCAAGGATCGAGAAGCAGGTCAGGTGGGATGAGTGTCTCCTTGGCGAGCCCGGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTGCTTATAGCTGCAGGCCCTGTACAGGTTGTGGTAGGGAGTTTTCTACCAACTAGTAGCCAACAGGAGCCGAAAGTAAAGAAACAGAAGCCTGAATCAGTACCAGCTGCAGCCCCTGTTGCAGCCCCGACCACAACACCAGCCACCACCGTGCCGACTTCCAATGCCGATACAGACGACAGTTTAAACGGTAACGGTCAACCAAATCCCGGGTCCCTAAAACCGGCCAGTTTTGCTCCTTCGGCTTTCCAGAGAGACAATTGGGGTGCCAATGCTGCCGTGCGTTCTTCCTTGCAGGAGCCGAGAAATTCGCCCACCGACATCAATATATCGCTCCCGGGCTAA 1044 53.83 MEEREAINTGVTVIGAEAPSAYHVAPRTENPPPASGGGGGSPTVAASPVSVGLPGSETTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPGAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGSRSRSGGMSVSLASPDGRVVGGGVAGLLIAAGPVQVVVGSFLPTSSQQEPKVKKQKPESVPAAAPVAAPTTTPATTVPTSNADTDDSLNGNGQPNPGSLKPASFAPSAFQRDNWGANAAVRSSLQEPRNSPTDINISLPG 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14913849 14918553 - CmoCh14G020400.1 Cmo14g02040 397306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02040 347 CDD DUF296 135 248 IPR005175 -
Cmo14g02040 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 248 IPR005175 -
Cmo14g02040 347 ProSiteProfiles PPC domain profile profile. 130 269 IPR005175 -
Cmo14g02040 347 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 346 - -
Cmo14g02040 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 133 257 - -
Cmo14g02040 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 346 IPR039605 GO:0003680
Cmo14g02040 347 MobiDBLite consensus disorder prediction 1 75 - -
Cmo14g02040 347 Gene3D - 135 265 - -
Cmo14g02040 347 MobiDBLite consensus disorder prediction 252 347 - -
Cmo14g02040 347 MobiDBLite consensus disorder prediction 276 307 - -
Cmo14g02040 347 MobiDBLite consensus disorder prediction 323 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01022 Cmo-Chr2:6215634 Cmo14g02040 Cmo-Chr14:14913849 1.48E-81 dispersed
Cmo06g00770 Cmo-Chr6:4004220 Cmo14g02040 Cmo-Chr14:14913849 2.53E-76 dispersed
Cmo14g02040 Cmo-Chr14:14913849 Cmo18g01215 Cmo-Chr18:12076006 3.83E-88 dispersed
Cmo14g02040 Cmo-Chr14:14913849 Cmo15g01234 Cmo-Chr15:8497053 2.62E-99 wgd
Cmo14g02040 Cmo-Chr14:14913849 Cmo16g01081 Cmo-Chr16:7648276 1.36E-87 wgd
Cmo14g02040 Cmo-Chr14:14913849 Cmo06g01158 Cmo-Chr6:8884280 6.00E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02040 - - csv:101212918 541.576