Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02043 ATGAAAGAACGGCAAGAAAGCAAGGCCGAGATGAGCTCGAGGCACGGCGGTGGAGGTTGCAAGGAGGGCAATGGTGGTAGTAGCAGCAATGGCAGCGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGAAGGAAGTGTACACCGGAGTGTATATTTGCACCTTACTTTGACTCTGAACAAGGCACGACTCATTTTGCAGCCGTGCACAAAGTGTTCGGAGCTAGTAATGTGTCGAAGCTGCTATTGCATATTCCTGAACACAAGCGCCTCGATGCAGCTATAACCATATGCTACGAGGCACAAGCTCGTGTTAGAGAGCCAGTTTTTGGTTGTGTTGCTCATATCTTTGCCCTTCAACAACAGGCTGCGAGGTTGCAAGTAGAGCTCTCATACTTGCAAGCGTACCTAGCAGCATCTGAGCTTTCAAGAACCGCACCACATCCACAGGCACAGCCACAAGATCTGGTCAAGCCAACAATACCCTCAATTGTAAACCTTCCATTAGATTGCCCTTCTTTGCCTTCTGCTGCATCAGATCTTTCACTGCTTCTCGATCCTGTGGAGCAAGCTTCGCCGGCAAAGTTGCAGTCTCCATTGGAATTCTGTCAAATTAGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAGATTGTCCAAAAACAACTCTCCACGATGCAACGCATTGGTGCCTCGCTATTTCCCTACGTCCCTAAACGAGCCTAA 729 49.38 MKERQESKAEMSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVELSYLQAYLAASELSRTAPHPQAQPQDLVKPTIPSIVNLPLDCPSLPSAASDLSLLLDPVEQASPAKLQSPLEFCQIRSNNFPSMGSIDQQIVQKQLSTMQRIGASLFPYVPKRA 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14933551 14934653 + CmoCh14G020430.1 Cmo14g02043 397309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02043 242 Pfam Lateral organ boundaries (LOB) domain 35 133 IPR004883 -
Cmo14g02043 242 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 11 197 - -
Cmo14g02043 242 ProSiteProfiles LOB domain profile. 34 136 IPR004883 -
Cmo14g02043 242 MobiDBLite consensus disorder prediction 1 34 - -
Cmo14g02043 242 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02043 Cmo-Chr14:14933551 Cmo17g00032 Cmo-Chr17:146651 2.39E-52 dispersed
Cmo14g02043 Cmo-Chr14:14933551 Cmo17g00031 Cmo-Chr17:140116 8.82E-64 wgd
Cmo14g02043 Cmo-Chr14:14933551 Cmo08g00921 Cmo-Chr8:6007802 7.66E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11080 PF03195 LOB 9.00E-37 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02043 K21994 - csv:101216934 354.369