Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo14g02050 | ATGTCTGTTACTTTGCACACCAATCTCGGAGACATCAAGTGCGAGATTTCTTGCGATGAAGTCCCGAAGTCTGCCGAGAACTTTTTAGCACTGTGTGCAAGTGGTTACTATGATGGAACCATATTCCACCGCAACATCAAAGGCTTTATGATACAAGGTGGAGATCCAACAGGCACGGGAAAAGGGGGAACCAGCATATGGGGTAAAAAGTTTAATGACGAGATAAGGGAGTCACTCAAGCACAATGCAAGAGGGATATTATCAATGGCTAATAGTGGAGCAAATACGAATGGAAGCCAGTTTTTTATAACATATGCAAAGCAGCCACATTTAAATGGATTGTATACTGTGTTCGGCAGAGTGATTCATGGGTTTGAAGTACTTGACATCATGGAAAAGACTCAAACCGGACCGGGAGATCGTCCTCTCGCGGAGATCAGGCTCAATCGGGTGACGATACACGCTAATCCTCTTGCAGGCTAA | 483 | 44.72 | MSVTLHTNLGDIKCEISCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 14980576 | 14983281 | - | CmoCh14G020500.1 | Cmo14g02050 | 397316 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo14g02050 | 160 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 3 | 152 | IPR002130 | GO:0000413|GO:0003755 | |
| Cmo14g02050 | 160 | PIRSF | Peptidylpro_ismrse | 1 | 157 | IPR024936 | GO:0003755 | |
| Cmo14g02050 | 160 | Gene3D | - | 1 | 160 | IPR029000 | - | |
| Cmo14g02050 | 160 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 6 | 153 | IPR002130 | GO:0000413|GO:0003755 | |
| Cmo14g02050 | 160 | CDD | Cyclophilin_PPIL3_like | 1 | 153 | - | - | |
| Cmo14g02050 | 160 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 2 | 159 | IPR044666 | - | |
| Cmo14g02050 | 160 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 | 2 | 159 | - | - | |
| Cmo14g02050 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 16 | 31 | IPR002130 | GO:0000413|GO:0003755 | |
| Cmo14g02050 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 42 | 54 | IPR002130 | GO:0000413|GO:0003755 | |
| Cmo14g02050 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 85 | 100 | IPR002130 | GO:0000413|GO:0003755 | |
| Cmo14g02050 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 100 | 112 | IPR002130 | GO:0000413|GO:0003755 | |
| Cmo14g02050 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 113 | 128 | IPR002130 | GO:0000413|GO:0003755 | |
| Cmo14g02050 | 160 | SUPERFAMILY | Cyclophilin-like | 1 | 157 | IPR029000 | - | |
| Cmo14g02050 | 160 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 37 | 54 | IPR020892 | GO:0003755|GO:0006457 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo07g00660 | Cmo-Chr7:2969047 | Cmo14g02050 | Cmo-Chr14:14980576 | 1.57E-57 | dispersed | |
| Cmo12g00787 | Cmo-Chr12:6406377 | Cmo14g02050 | Cmo-Chr14:14980576 | 5.31E-49 | dispersed | |
| Cmo14g02050 | Cmo-Chr14:14980576 | Cmo20g00895 | Cmo-Chr20:4540672 | 1.96E-39 | dispersed | |
| Cmo14g02050 | Cmo-Chr14:14980576 | Cmo06g01151 | Cmo-Chr6:8822123 | 3.05E-115 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo14g02050 | K12734 | - | csv:101211474 | 323.553 |