Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02060 ATGGTGAGAGGAAAAACTGAGATGAGGCGAATCGAGAATGCGACGAGTCGTCAAGTTACGTTCTCAAAGCGTCGGAACGGGTTGCTGAAGAAGGCGTTCGAGCTCTCCGTTCTTTGTGACGCTGAACTTGCTCTTATCATCTTCTCTTCTACTGGAAAGCTTTATGAATTTGCTAGCTCCAGCTTGCAGGCCACAGTGGGGCGTTACCTAAGGCATACCAAAGCAACTCATTGTCTTCAACCTCCATCTCATCAACACGACTTACAATCGGTTCAGAATGAAGCTACGAGTTTGCTGGACGAGATCGAGTCACTCGAGGTTTCGAAGAGGAAATTGTTGGGAGAAGGTCTAGGATCAAGCTCCTATGAAGAACTTCAACAAATAGAAAAGCAGCTAGAGAGGAGCTTAGCTCATGTTAAAGCTAGAAAGTACGAGATTTACAAGGAACAGATTGAACAACTAAAAGAAAAGGAGAAATATTTGGCTGCTGAAAATGCAAAGCTTGCTAAGAAGATATGA 519 43.93 MVRGKTEMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIIFSSTGKLYEFASSSLQATVGRYLRHTKATHCLQPPSHQHDLQSVQNEATSLLDEIESLEVSKRKLLGEGLGSSSYEELQQIEKQLERSLAHVKARKYEIYKEQIEQLKEKEKYLAAENAKLAKKI 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15036993 15039557 - CmoCh14G020600.1 Cmo14g02060 397326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02060 172 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo14g02060 172 SUPERFAMILY SRF-like 3 86 IPR036879 GO:0003677|GO:0046983
Cmo14g02060 172 PANTHER MADS-BOX PROTEIN SOC1 1 171 - -
Cmo14g02060 172 Coils Coil 88 108 - -
Cmo14g02060 172 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo14g02060 172 ProSiteProfiles K-box domain profile. 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo14g02060 172 Coils Coil 122 171 - -
Cmo14g02060 172 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Cmo14g02060 172 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo14g02060 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo14g02060 172 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Cmo14g02060 172 PANTHER MADS BOX PROTEIN 1 171 - -
Cmo14g02060 172 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo14g02060 172 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo14g02060 172 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo14g02060 172 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00054 Cmo-Chr3:889514 Cmo14g02060 Cmo-Chr14:15036993 6.57E-40 dispersed
Cmo08g00912 Cmo-Chr8:5937954 Cmo14g02060 Cmo-Chr14:15036993 9.92E-75 dispersed
Cmo09g01305 Cmo-Chr9:11579332 Cmo14g02060 Cmo-Chr14:15036993 1.49E-29 dispersed
Cmo14g02060 Cmo-Chr14:15036993 Cmo08g00911 Cmo-Chr8:5934466 1.05E-47 dispersed
Cmo14g02060 Cmo-Chr14:15036993 Cmo15g01250 Cmo-Chr15:8582334 2.00E-58 wgd
Cmo14g02060 Cmo-Chr14:15036993 Cmo06g01143 Cmo-Chr6:8774826 8.10E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11082 PF01486 K-box 3.70E-26 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02060 - - csv:101209501 268.855