Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02074 ATGAGTTCCGCACCACGATTCGACTCTAGTAGTGCTCACGGCGGCGGCATCGGCGGTGGACACGGCACTCTTATGGCCTCCGGTGCAATTGCTCACCCACGTCTTGTTACTCAGTCTTCTTTCTCCAAATCCATGTTCTCTTCCCCTAGACTCTCTCTCGCTCTTACTAATATCGATGGTTTCGGCGCCGGGGAGATGATTTCGGCGGATGCTGGTTTTGAGGAGAATGTGAGGAGGAGGAGAAGAGAGGAAGAGGCCACGGACAGCAGATCTGGTAGTGATAACATGGACGGCGGCGGTGGTTCTGGCGACGATCTGGACGCCGCTGTCGGCGATAATCCTAGGAAGAAGAAGCGGTACCACCGTCACACTCCGCAACAAATCCAAGAACTCGAAGCTATGTTCAAGGAGTGTCCTCATCCTGATGAGAAACAAAGATTGGAGCTCAGTAGAAGACTGTCTTTAGAAATAAAACAAGTTAAATTCTGGTTTCAAAATCGTCGAACTCAAATGAAGACGCAACTGGAACGCCATGAAAACACATTACTAAGACACGAGAACGAGAAGCTCCGAACAGAGAACATGGCGATTCGAGAGGCGATGAGAAGCCCAATCTGCTCAAACTGCGGCGGACCGGCTATCATCGGAGAAATCTCCTTAGAAGAACAGCAACTCCGAATCGAAAACGCTCGATTGAAGGACGAATTGGACCGGGTGTGCGCTCTAGCCGGAAAATTCGTGGGGAGGCCGGTTCCAGTATCACCGTCATTGGAGGAATATGGAGGTGGAATGATGATGATGGAGAGATGCGTGTATTTGGAAATGGCCTTGGCGGCCATGGATGAGCTTGTGAAAATGGCGAACGGGGAAGAACCACTGTGGATTGGAGAAAAACTGAACGAAGAAGAATATTCGAGAATGTTCAGCGGCGGTTGTTTTGGTGGCTTCGTTTCTGAAGCTTCCAGAGAATCTGCTCTCCTCTTCCTCCACTCTTCTGCTCTCCTCGACACTCTAATGGAGGCTAACCGGTGGGTGGAGATGTTTCCGAACTTGATTGCGACGGCGACTACCACCGACGTAATCTCCGGCGGAATGGGAGGAACCCGAAACGGCGCTCTTCAATTGATGCATGCGGAGCTTCAAATTCTGTCTCCCATGGTTCCGGTGAGACAATTAAATTTCCTCCGCTTCTGCAAGCAGCATGCCGAAGGCGTTTGGGCGGTTGTTGACGTCTCCATCGATCCCATTACCGATACTTCCTCTCCGCCGTGCCGGAGACTCCCCTCCGGCTGCCTCATCCACGACATGCCCAATGGCTACTCCAAGGTTACTTGGGTTGAGCATTCTGAATACGATGAAAGCCAAATTCATGAGCTGTACCGACCCCTTGTCCGCTCCGGCCTTGGCTTTGGCGCGCGACGGTGGATCGCCACCCTCCAGCGCCAATCTGAAGCCCTCGCCACCCTCCTCTCCTCCCCATCTGACCAGTCCGGGATATCCGCCGACGGACGGCGGAGCATGGTGAAGCTAGCGCAGCGGATGACAGCAAATTTCTGCACAGGAGTATGCGCATCAACGGTGTACAAATGGAACAAGCTGAACACGGGCAATAACAATGTTGGAGAGGATGTGAGAGTGATGACAAGGAAGAGCGTGGAGGATCCAGGGGAGCCGCCAGGGACGGTGCTGAGTGCAGCAACGTCGGTGTGGGTGGCGGCGACAGCAGAGAGAGTGTTTGAGTTTCTTCGTGATGAGCGACTGAGGAGCGAATGGGACATTCTGTCCAACGGCGGCCCCATGCAGGAAATGCTCCATATCCCCAAAGCCCATCACCATCACCATGCCAACGCCGTCTCTCTCCTCCGTGCCACCTCTCTAAATCCAAACCAGAGCAGTATGCTGATTCTCCAAGAGACCTGCTCCGATGCATCTGGGTCGCTTGTAGTGTACGCGCCGGTGGATATTCCGGCAATGCAGGTGGTGATGAACGGCGGAGACTCGGCCTACGTGGCTCTACTACCGTCGGGGTTCGCGGTGGTACCGGCGGCGGAGGATTGTGGCGGTGGGAGCCTGTTGACGGTGGCGTTTCAGATATTGGTGAACAGTTTACCCACGGATAAGCTGACGGTGGAGTCGGTGGAGACAGTGAATAATCTGATATCGTGTACGGTAAAGAAAATTAAAACCGCTCTCCGGTGTCACGAGCTTTCCACGTGA 2217 53.68 MSSAPRFDSSSAHGGGIGGGHGTLMASGAIAHPRLVTQSSFSKSMFSSPRLSLALTNIDGFGAGEMISADAGFEENVRRRRREEEATDSRSGSDNMDGGGGSGDDLDAAVGDNPRKKKRYHRHTPQQIQELEAMFKECPHPDEKQRLELSRRLSLEIKQVKFWFQNRRTQMKTQLERHENTLLRHENEKLRTENMAIREAMRSPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFVGRPVPVSPSLEEYGGGMMMMERCVYLEMALAAMDELVKMANGEEPLWIGEKLNEEEYSRMFSGGCFGGFVSEASRESALLFLHSSALLDTLMEANRWVEMFPNLIATATTTDVISGGMGGTRNGALQLMHAELQILSPMVPVRQLNFLRFCKQHAEGVWAVVDVSIDPITDTSSPPCRRLPSGCLIHDMPNGYSKVTWVEHSEYDESQIHELYRPLVRSGLGFGARRWIATLQRQSEALATLLSSPSDQSGISADGRRSMVKLAQRMTANFCTGVCASTVYKWNKLNTGNNNVGEDVRVMTRKSVEDPGEPPGTVLSAATSVWVAATAERVFEFLRDERLRSEWDILSNGGPMQEMLHIPKAHHHHHANAVSLLRATSLNPNQSSMLILQETCSDASGSLVVYAPVDIPAMQVVMNGGDSAYVALLPSGFAVVPAAEDCGGGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVKKIKTALRCHELST 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15106336 15110710 + CmoCh14G020740.1 Cmo14g02074 397340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02074 738 ProSiteProfiles START domain profile. 265 488 IPR002913 GO:0008289
Cmo14g02074 738 ProSitePatterns 'Homeobox' domain signature. 149 172 IPR017970 GO:0000981|GO:0006355
Cmo14g02074 738 SUPERFAMILY Homeodomain-like 98 174 IPR009057 -
Cmo14g02074 738 SMART START_1 274 485 IPR002913 GO:0008289
Cmo14g02074 738 MobiDBLite consensus disorder prediction 1 20 - -
Cmo14g02074 738 SUPERFAMILY Bet v1-like 503 722 - -
Cmo14g02074 738 MobiDBLite consensus disorder prediction 74 91 - -
Cmo14g02074 738 Pfam Homeodomain 117 172 IPR001356 GO:0003677
Cmo14g02074 738 ProSiteProfiles 'Homeobox' domain profile. 114 174 IPR001356 GO:0003677
Cmo14g02074 738 MobiDBLite consensus disorder prediction 74 124 - -
Cmo14g02074 738 SMART HOX_1 115 178 IPR001356 GO:0003677
Cmo14g02074 738 Coils Coil 215 235 - -
Cmo14g02074 738 Pfam START domain 275 484 IPR002913 GO:0008289
Cmo14g02074 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 266 732 - -
Cmo14g02074 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 69 256 - -
Cmo14g02074 738 CDD homeodomain 117 174 IPR001356 GO:0003677
Cmo14g02074 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 266 732 IPR042160 -
Cmo14g02074 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 69 256 IPR042160 -
Cmo14g02074 738 Coils Coil 168 195 - -
Cmo14g02074 738 CDD START_ArGLABRA2_like 273 484 - -
Cmo14g02074 738 SUPERFAMILY Bet v1-like 269 486 - -
Cmo14g02074 738 Gene3D - 107 190 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g02074 Cmo17g00020 CCT
Cmo14g02074 Cmo17g00020 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02074 Cmo-Chr14:15106336 Cmo17g00020 Cmo-Chr17:89213 0 dispersed
Cmo14g02074 Cmo-Chr14:15106336 Cmo16g00146 Cmo-Chr16:664145 0 wgd
Cmo14g02074 Cmo-Chr14:15106336 Cmo18g01257 Cmo-Chr18:12311482 0 wgd
Cmo14g02074 Cmo-Chr14:15106336 Cmo08g00893 Cmo-Chr8:5801325 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11084 PF01852 START 7.70E-48 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02074 K09338 - csv:101222248 944.88