Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo14g02105 | ATGGCGGTTGTGAGTTCTAAGCAAGAAGCTACACCACGAGCTGGTCCAACTAACTATACTGAAGCTTCGCCAATTATGATCAGTTCAAGTAGAGAGATTGTAGAAGAGCCAGTGGGAGCTATTAGTGATGATATTATTTATGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGGTATGCACTAAATTCCTCTCGTGGGAAGAAAATTTGCCTCCTCCACGTTCATGTCCCTGCACAGATGACTCCATTAATGGGAACCAAATTTCCAGAAAACTCATTGCAGAAAGAGGAAGTGAGAGCATATCACAAGTTTGAGAAGCAAAATTTGCTGAGGGTCATGAATGAGTATATTCTGTACTGTCTTCAAGAAGGGGTTCGTGCCGAGAAATTATGTGGTGAAGCTAAGAGTGTTGAGGTGGGGATAGTTGATATGATTTCCCTGCATAGGATTAAAAAGCTTGTTATGGGAGCAGCTGTAGACAAGTGTTATTCAAGGAGAATGGTGGATCTGAAGTCTGAGAAAGCCATTTACGTGCGTTCGCAGGCACCTGCCTTCTGTCACATTGAGTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGATGGTAGATCAGATGGAGCTCAAGTAGAAACTGTCTTCTTATCACCGCAAACAAGTCCAGACTCTGAATCCTCAGAAATTTCCCCCTGGAGATCTCTGTCACTACCACCGGGACAGTTTAATAGCTGGGAAGTTGGATGTCCATCTTCGGATTTACGTCCTAGAGGGAGATCATTGCTTATTGATCATTTTAGAGGGAGCACACTAAATCCGTCTTCTCCTGATAATATGAATGGGGTTCATACTACCAGAAACTTGGATGTTAACGGGGCTTCGGATGGATGGGGTTTAGTAACACGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCATACACTCTCCTCATGATGTGATTAATATGGCTCCTTCTCCACCTTCCAGGGTTGAGTTATCTGCAAATTGGCTGGAGCAGGATGCAAAGACCAGTGATTATCTTTACAATCAATGTGAACGGGTGATGATAGAGGCTGCAAATGCAAGGCCTGATTCATTTTTCGAAGCAATTGCACGTGGAAAATCTGAGAAAGAAACCCTTAATGCTCTACGCAGGGTTAAAGCTGCAGAAGTGTTATATTCTGAAGAACGGAAGCAAAGGAAGGAAGTTGAACAAGAACTAGTCAAGGAAAACGCAAAACTTGAAAGTATAAAGACAAAACTAAATGAAGAGATGGAAGAGCTCCGGATGGCCCAAGATCAGAAGGCAAGTTTGGAGAGAGAACTTTTAGAATCTGATCTAACTGCGAAGGAGTTAGAGGAAAGGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGAGAGCGAGAGGAATTGGAGATTCAACGCGACAATGCACTTAGAGAAGCAGACGAGCTTAGAAGAAGAAATCAATCCACACGCCGGTCCCTTCCACAGTTCTTTACCGAGTTCCCTTTTTCGGAGATTGAGGAAGCAACTCAAAACTTTGATCCCTCCCTGAAGATTGGAGAAGAAGGATATGGGAGTATATACCGAGGTGTTTTACGTCATATGATGGTGGCTATAAAAATCCTACATTCTGATAGCTCTCAAGGACCCTCTGAATTTCAACAAGAGGTTGATGTATCGAGTAAGATGAGACATCCTAATCTTGTCACGCTCATTGGAGCCTGTCCTGAAGCTTTGGTTCTCGTCTATGAATACCTTAGTAATGGAAGCCTCGAAGATAGGCTCAGCTGCAAGGATAACACTCCCCCTTTATCTTGGCAAACACGAATACGCATCGCCACTGAGTTATGCTCTGCCGTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTCGATGAAAACTATGTATGCAAGCTTGGCGAGTTTGGAACTTGTCGCTTATTGTCACATGATGAAATGCTAAACAACAACGAAACACTTGTTTGGAGAACCGACGACCCCAAGGGGACGGATGCTTACACGGATCCTGAGTTCCTTTCATCTGGTGAGCTAACAACAGAGTCGGATGTCTATTCATTTGGGATAATACTCTTGCGGTTGTTGACCGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAAAATGCAATTGAAAATGGAAAGCTAAAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTCGTGCAGGCCGAACAGCTTGCTCGATTGGCATTGAGGTGTTGTGACGTGAACCGAAAGAGCCGCCCCGATCTCGTTACCGATGTCTGGAGAGTGCTTGGACCAATGAGAGCTTCATGTGGGGGGCTATTGTCTGTCAAGCTCGGTTCTGCAGAACACTTGCAACCTCCCCCTTATTTCATCTGTCCCATCTTTCAGGAAGTCATGCAGGATCCACATGTGGCTGCAGATGGCTTTACATATGAAGCGGAGGCCATGAGAGGATGGCTAGACAGTGGACACGATACTTCGCCAATGACAAACTGTAGGCTCGAGCATCGCAACCTTGTCCCAAACCGCGCTCTTCGTTCTGCTATCCAGGAATGGCTCCAACAAAACTAA | 2637 | 44.44 | MAVVSSKQEATPRAGPTNYTEASPIMISSSREIVEEPVGAISDDIIYVAVGKDVKECLSVLRYALNSSRGKKICLLHVHVPAQMTPLMGTKFPENSLQKEEVRAYHKFEKQNLLRVMNEYILYCLQEGVRAEKLCGEAKSVEVGIVDMISLHRIKKLVMGAAVDKCYSRRMVDLKSEKAIYVRSQAPAFCHIEFICKGNLICTRDGRSDGAQVETVFLSPQTSPDSESSEISPWRSLSLPPGQFNSWEVGCPSSDLRPRGRSLLIDHFRGSTLNPSSPDNMNGVHTTRNLDVNGASDGWGLVTRRSPSERSDNSIHSPHDVINMAPSPPSRVELSANWLEQDAKTSDYLYNQCERVMIEAANARPDSFFEAIARGKSEKETLNALRRVKAAEVLYSEERKQRKEVEQELVKENAKLESIKTKLNEEMEELRMAQDQKASLERELLESDLTAKELEERILSAVELLQSYKREREELEIQRDNALREADELRRRNQSTRRSLPQFFTEFPFSEIEEATQNFDPSLKIGEEGYGSIYRGVLRHMMVAIKILHSDSSQGPSEFQQEVDVSSKMRHPNLVTLIGACPEALVLVYEYLSNGSLEDRLSCKDNTPPLSWQTRIRIATELCSAVMFLHSSKPHSIIHGDLKPANVLLDENYVCKLGEFGTCRLLSHDEMLNNNETLVWRTDDPKGTDAYTDPEFLSSGELTTESDVYSFGIILLRLLTGRSAMGISKEVQNAIENGKLKSILDPLAGDWPFVQAEQLARLALRCCDVNRKSRPDLVTDVWRVLGPMRASCGGLLSVKLGSAEHLQPPPYFICPIFQEVMQDPHVAADGFTYEAEAMRGWLDSGHDTSPMTNCRLEHRNLVPNRALRSAIQEWLQQN | 878 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 15250662 | 15256236 | + | CmoCh14G021050.1 | Cmo14g02105 | 397371 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo14g02105 | 878 | Pfam | Protein kinase domain | 524 | 776 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo14g02105 | 878 | SMART | serkin_6 | 519 | 785 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo14g02105 | 878 | Gene3D | Phosphorylase Kinase; domain 1 | 504 | 591 | - | - | |
Cmo14g02105 | 878 | Pfam | U-box domain | 809 | 878 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo14g02105 | 878 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 807 | 878 | IPR013083 | - | |
Cmo14g02105 | 878 | ProSiteProfiles | U-box domain profile. | 807 | 878 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo14g02105 | 878 | SUPERFAMILY | RING/U-box | 803 | 878 | - | - | |
Cmo14g02105 | 878 | CDD | STK_N | 45 | 198 | - | - | |
Cmo14g02105 | 878 | MobiDBLite | consensus disorder prediction | 304 | 327 | - | - | |
Cmo14g02105 | 878 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 637 | 649 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo14g02105 | 878 | Gene3D | Transferase(Phosphotransferase) domain 1 | 592 | 790 | - | - | |
Cmo14g02105 | 878 | PANTHER | OS02G0152300 PROTEIN | 41 | 874 | - | - | |
Cmo14g02105 | 878 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cmo14g02105 | 878 | ProSiteProfiles | Protein kinase domain profile. | 519 | 789 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo14g02105 | 878 | SUPERFAMILY | Protein kinase-like (PK-like) | 493 | 777 | IPR011009 | - | |
Cmo14g02105 | 878 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 33 | 41 | 874 | - | - | |
Cmo14g02105 | 878 | SMART | Ubox_2 | 811 | 874 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo14g02105 | 878 | CDD | RING-Ubox_WDSUB1_like | 812 | 853 | - | - | |
Cmo14g02105 | 878 | Coils | Coil | 388 | 499 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00583 | Cmo-Chr7:2633161 | Cmo14g02105 | Cmo-Chr14:15250662 | 2.92E-08 | dispersed | |
Cmo14g02105 | Cmo-Chr14:15250662 | Cmo17g00412 | Cmo-Chr17:2732800 | 0 | dispersed | |
Cmo14g02105 | Cmo-Chr14:15250662 | Cmo16g00127 | Cmo-Chr16:572977 | 5.87E-14 | wgd | |
Cmo14g02105 | Cmo-Chr14:15250662 | Cmo18g01279 | Cmo-Chr18:12396337 | 2.55E-26 | wgd | |
Cmo14g02105 | Cmo-Chr14:15250662 | Cmo06g01094 | Cmo-Chr6:8423517 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74884 | PF00069 | Pkinase | 8.20E-39 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo14g02105 | - | - | csv:101211387 | 1433.7 |