Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02105 ATGGCGGTTGTGAGTTCTAAGCAAGAAGCTACACCACGAGCTGGTCCAACTAACTATACTGAAGCTTCGCCAATTATGATCAGTTCAAGTAGAGAGATTGTAGAAGAGCCAGTGGGAGCTATTAGTGATGATATTATTTATGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGGTATGCACTAAATTCCTCTCGTGGGAAGAAAATTTGCCTCCTCCACGTTCATGTCCCTGCACAGATGACTCCATTAATGGGAACCAAATTTCCAGAAAACTCATTGCAGAAAGAGGAAGTGAGAGCATATCACAAGTTTGAGAAGCAAAATTTGCTGAGGGTCATGAATGAGTATATTCTGTACTGTCTTCAAGAAGGGGTTCGTGCCGAGAAATTATGTGGTGAAGCTAAGAGTGTTGAGGTGGGGATAGTTGATATGATTTCCCTGCATAGGATTAAAAAGCTTGTTATGGGAGCAGCTGTAGACAAGTGTTATTCAAGGAGAATGGTGGATCTGAAGTCTGAGAAAGCCATTTACGTGCGTTCGCAGGCACCTGCCTTCTGTCACATTGAGTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGATGGTAGATCAGATGGAGCTCAAGTAGAAACTGTCTTCTTATCACCGCAAACAAGTCCAGACTCTGAATCCTCAGAAATTTCCCCCTGGAGATCTCTGTCACTACCACCGGGACAGTTTAATAGCTGGGAAGTTGGATGTCCATCTTCGGATTTACGTCCTAGAGGGAGATCATTGCTTATTGATCATTTTAGAGGGAGCACACTAAATCCGTCTTCTCCTGATAATATGAATGGGGTTCATACTACCAGAAACTTGGATGTTAACGGGGCTTCGGATGGATGGGGTTTAGTAACACGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCATACACTCTCCTCATGATGTGATTAATATGGCTCCTTCTCCACCTTCCAGGGTTGAGTTATCTGCAAATTGGCTGGAGCAGGATGCAAAGACCAGTGATTATCTTTACAATCAATGTGAACGGGTGATGATAGAGGCTGCAAATGCAAGGCCTGATTCATTTTTCGAAGCAATTGCACGTGGAAAATCTGAGAAAGAAACCCTTAATGCTCTACGCAGGGTTAAAGCTGCAGAAGTGTTATATTCTGAAGAACGGAAGCAAAGGAAGGAAGTTGAACAAGAACTAGTCAAGGAAAACGCAAAACTTGAAAGTATAAAGACAAAACTAAATGAAGAGATGGAAGAGCTCCGGATGGCCCAAGATCAGAAGGCAAGTTTGGAGAGAGAACTTTTAGAATCTGATCTAACTGCGAAGGAGTTAGAGGAAAGGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGAGAGCGAGAGGAATTGGAGATTCAACGCGACAATGCACTTAGAGAAGCAGACGAGCTTAGAAGAAGAAATCAATCCACACGCCGGTCCCTTCCACAGTTCTTTACCGAGTTCCCTTTTTCGGAGATTGAGGAAGCAACTCAAAACTTTGATCCCTCCCTGAAGATTGGAGAAGAAGGATATGGGAGTATATACCGAGGTGTTTTACGTCATATGATGGTGGCTATAAAAATCCTACATTCTGATAGCTCTCAAGGACCCTCTGAATTTCAACAAGAGGTTGATGTATCGAGTAAGATGAGACATCCTAATCTTGTCACGCTCATTGGAGCCTGTCCTGAAGCTTTGGTTCTCGTCTATGAATACCTTAGTAATGGAAGCCTCGAAGATAGGCTCAGCTGCAAGGATAACACTCCCCCTTTATCTTGGCAAACACGAATACGCATCGCCACTGAGTTATGCTCTGCCGTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTCGATGAAAACTATGTATGCAAGCTTGGCGAGTTTGGAACTTGTCGCTTATTGTCACATGATGAAATGCTAAACAACAACGAAACACTTGTTTGGAGAACCGACGACCCCAAGGGGACGGATGCTTACACGGATCCTGAGTTCCTTTCATCTGGTGAGCTAACAACAGAGTCGGATGTCTATTCATTTGGGATAATACTCTTGCGGTTGTTGACCGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAAAATGCAATTGAAAATGGAAAGCTAAAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTCGTGCAGGCCGAACAGCTTGCTCGATTGGCATTGAGGTGTTGTGACGTGAACCGAAAGAGCCGCCCCGATCTCGTTACCGATGTCTGGAGAGTGCTTGGACCAATGAGAGCTTCATGTGGGGGGCTATTGTCTGTCAAGCTCGGTTCTGCAGAACACTTGCAACCTCCCCCTTATTTCATCTGTCCCATCTTTCAGGAAGTCATGCAGGATCCACATGTGGCTGCAGATGGCTTTACATATGAAGCGGAGGCCATGAGAGGATGGCTAGACAGTGGACACGATACTTCGCCAATGACAAACTGTAGGCTCGAGCATCGCAACCTTGTCCCAAACCGCGCTCTTCGTTCTGCTATCCAGGAATGGCTCCAACAAAACTAA 2637 44.44 MAVVSSKQEATPRAGPTNYTEASPIMISSSREIVEEPVGAISDDIIYVAVGKDVKECLSVLRYALNSSRGKKICLLHVHVPAQMTPLMGTKFPENSLQKEEVRAYHKFEKQNLLRVMNEYILYCLQEGVRAEKLCGEAKSVEVGIVDMISLHRIKKLVMGAAVDKCYSRRMVDLKSEKAIYVRSQAPAFCHIEFICKGNLICTRDGRSDGAQVETVFLSPQTSPDSESSEISPWRSLSLPPGQFNSWEVGCPSSDLRPRGRSLLIDHFRGSTLNPSSPDNMNGVHTTRNLDVNGASDGWGLVTRRSPSERSDNSIHSPHDVINMAPSPPSRVELSANWLEQDAKTSDYLYNQCERVMIEAANARPDSFFEAIARGKSEKETLNALRRVKAAEVLYSEERKQRKEVEQELVKENAKLESIKTKLNEEMEELRMAQDQKASLERELLESDLTAKELEERILSAVELLQSYKREREELEIQRDNALREADELRRRNQSTRRSLPQFFTEFPFSEIEEATQNFDPSLKIGEEGYGSIYRGVLRHMMVAIKILHSDSSQGPSEFQQEVDVSSKMRHPNLVTLIGACPEALVLVYEYLSNGSLEDRLSCKDNTPPLSWQTRIRIATELCSAVMFLHSSKPHSIIHGDLKPANVLLDENYVCKLGEFGTCRLLSHDEMLNNNETLVWRTDDPKGTDAYTDPEFLSSGELTTESDVYSFGIILLRLLTGRSAMGISKEVQNAIENGKLKSILDPLAGDWPFVQAEQLARLALRCCDVNRKSRPDLVTDVWRVLGPMRASCGGLLSVKLGSAEHLQPPPYFICPIFQEVMQDPHVAADGFTYEAEAMRGWLDSGHDTSPMTNCRLEHRNLVPNRALRSAIQEWLQQN 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15250662 15256236 + CmoCh14G021050.1 Cmo14g02105 397371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02105 878 Pfam Protein kinase domain 524 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g02105 878 SMART serkin_6 519 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g02105 878 Gene3D Phosphorylase Kinase; domain 1 504 591 - -
Cmo14g02105 878 Pfam U-box domain 809 878 IPR003613 GO:0004842|GO:0016567
Cmo14g02105 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 807 878 IPR013083 -
Cmo14g02105 878 ProSiteProfiles U-box domain profile. 807 878 IPR003613 GO:0004842|GO:0016567
Cmo14g02105 878 SUPERFAMILY RING/U-box 803 878 - -
Cmo14g02105 878 CDD STK_N 45 198 - -
Cmo14g02105 878 MobiDBLite consensus disorder prediction 304 327 - -
Cmo14g02105 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Cmo14g02105 878 Gene3D Transferase(Phosphotransferase) domain 1 592 790 - -
Cmo14g02105 878 PANTHER OS02G0152300 PROTEIN 41 874 - -
Cmo14g02105 878 MobiDBLite consensus disorder prediction 1 21 - -
Cmo14g02105 878 ProSiteProfiles Protein kinase domain profile. 519 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g02105 878 SUPERFAMILY Protein kinase-like (PK-like) 493 777 IPR011009 -
Cmo14g02105 878 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 41 874 - -
Cmo14g02105 878 SMART Ubox_2 811 874 IPR003613 GO:0004842|GO:0016567
Cmo14g02105 878 CDD RING-Ubox_WDSUB1_like 812 853 - -
Cmo14g02105 878 Coils Coil 388 499 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00583 Cmo-Chr7:2633161 Cmo14g02105 Cmo-Chr14:15250662 2.92E-08 dispersed
Cmo14g02105 Cmo-Chr14:15250662 Cmo17g00412 Cmo-Chr17:2732800 0 dispersed
Cmo14g02105 Cmo-Chr14:15250662 Cmo16g00127 Cmo-Chr16:572977 5.87E-14 wgd
Cmo14g02105 Cmo-Chr14:15250662 Cmo18g01279 Cmo-Chr18:12396337 2.55E-26 wgd
Cmo14g02105 Cmo-Chr14:15250662 Cmo06g01094 Cmo-Chr6:8423517 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74884 PF00069 Pkinase 8.20E-39 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02105 - - csv:101211387 1433.7