Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02111 ATGGGAGGCTGCTGCTGTTCGACCCGAAAATCGGATGGAACTCCAGCATACTACTATTGCCCGCTGTCTATGGAGGAGCGTGAGTCATCCGAAATTCATGGTGGCTCAGGGTCCATGCTCATTGGTGCAGGACATGATTTGAACCTGGATTTGTCGATACCGAACACTTACCGAGCCCCTCCGACACCTCTCCCGTATGATGCAGCTTTGAAATGTCCACAACCGAAAGATCTCAACTCTTTTAAAGAAACAAAATGTGGATGCAGTTTTAAAACTTCATCAGCATTGAAAATTGTTGGGGAACTGGATTGTAAGTTCCAAGACAGCCCTTTGCTCGGAGGCCCTCCACGGAAACTCGATCACTCCAAGTCGAAAGGCAATACTCCCAGTCCGGTCACCGAAGAAGAGGATGTCTGTCCCATTTGTCTTGAAGAGTATGGTTCTGAACATCCAGAAATTATCACAAAATGCAAGCATCACTTTCACCTTGCTTGCCTTCTCGAGTGGACCGAAAGAAGCAATGCCTGTCCTATCTGCGACAAGGAGACGATATTTGAGTTACCTTGA 567 47.27 MGGCCCSTRKSDGTPAYYYCPLSMEERESSEIHGGSGSMLIGAGHDLNLDLSIPNTYRAPPTPLPYDAALKCPQPKDLNSFKETKCGCSFKTSSALKIVGELDCKFQDSPLLGGPPRKLDHSKSKGNTPSPVTEEEDVCPICLEEYGSEHPEIITKCKHHFHLACLLEWTERSNACPICDKETIFELP 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15284957 15288918 - CmoCh14G021110.1 Cmo14g02111 397377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02111 188 MobiDBLite consensus disorder prediction 115 134 - -
Cmo14g02111 188 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 186 - -
Cmo14g02111 188 Pfam Ring finger domain 138 179 IPR001841 -
Cmo14g02111 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 186 IPR013083 -
Cmo14g02111 188 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Cmo14g02111 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 186 - -
Cmo14g02111 188 SMART ring_2 139 179 IPR001841 -
Cmo14g02111 188 SUPERFAMILY RING/U-box 132 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02111 Cmo-Chr14:15284957 Cmo15g01303 Cmo-Chr15:8944516 2.49E-38 dispersed
Cmo14g02111 Cmo-Chr14:15284957 Cmo02g01472 Cmo-Chr2:8638743 5.55E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11090 PF13639 zf-RING_2 3.20E-12 CL0229 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02111 - - cmo:103483261 290.426