Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02168 ATGGGTTCTCAGATACCAAAATCTACAAGGTTTGGGCATCCAACTTCTGATTTTCATGACAAATATGGAAGTTATCAAAACGGAAGCAGACTGTCTCCAGGGTCAATATTGGAGAGCATAGAGAGAAAATTTTTAAGTGCTTATAAGAGCTTTAGAAGGATAATAACACACTTAAGTTTCAAGCATCCAGGTGATCAGTCAGTAAAGAAACCGAAGTTCTGGAAGAAAATTCTTGATCCACAGAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGCTCTCTTCTGTCATAGCAGTAGCTGTGGATCCTCTCTTCTTTTACATCCCAGTGATCAACGGAGAACGTCAATGCCTAACCATAGACCGACAACTTATGATCATTGCTTGTGTTCTTCGTTCAGTCATGGACTTATTTTATGTACTTCACATGATCTTTGAATTTCGAACGGGTTTTCTTCCCCCTTCTTTACCAGTATTTGGAAGTGGAGAATTAATCGAAGATCCAGCAGCTATAGCAAAGAGATATCTCTTCTCGAACTTCTTGATTGATATCTTATCCGTTCTCCCACTGCCTCAGCTTTTGGTATTAGCAATCATTCCTGCAGCGAGAGGCCCGGTTCCATTAAAGACAAAGGATCTTGTGAAGATTGCAGTTCTTTTGCAATATGTTCCAAGACTTCTCCGAATCTATCCACTATACAGAGAAGTAACCAGAACGGTTGGCATACTGACAGAAACAGCCTGGAGTGGAGCTGCCTTCAATCTCCTTATTTATATGCAAGTTAGTCATGTTGTTGGTGCCATTTGGTATTTGTTATCAGTAGAACGACAAGCCAAATGCTGGGTCGAGGCCTGCAGGAAAGATAAGTGTAAGGACAATTTTCTGTACTGTGGAAATCAAAGAAGACAAATACAGCCGTACATAGATCAGTATTGCTCCCCTAAGGAGTCTGAAGATGGAAAAACCTTCAACTTTGGGATGTATGTTGAAGCCCTTAAGTTTCAATTGACCAGTACGACGTCTTTTCGCCGCAAATTCTTCTATTCCTTCTGGTGGGCTTTGAGAAATGTCAGCTCTAGTGGACAAAACCTTCAAGTAAGCAATTACATGGGGGAGGTTTTTTTTGCTGTCTTCATTGCCATTCTTGGTTTGGTTTTATTTGCGTTACTCATTAGCAATATTCAGAAATATCTGCAGTCAGCAACTGTTAAAGTAGAGCAGATGAGAATTAACCGAAGAGACGCCGAGCATTGGATGGCACATCGTATGCTCCCAGAGGACTTGAGGCAGCGTATTCGACGATATGATCAGTACAAATGGCAGCTAAACAGGGGAGTTAAGGAAGAGGAACTCATCGGTAACCTTCCTAAAGACCTCAGGAGAGACATCAAACGCCATCTTTGCTATGCCCTTCTAAAGAAAGTGCCACTTTTTAGCGGCATGGACAAGCAACTGTTGGACGCGATGTGTGAATATCTCAAGCCTGTGTTATTCACAGAGAAGAGCTTCATTCTGCAAGAGGGTGACCCAATTGATATGGTGCTATTTATCATGAAAGGAAAGTTGGCTACCATTATTACTTATGGTTGGAAAAACGACACTCTTTCGGGCGTTCTTAACGCAGGTGACTTTTGTGGTGAAGAACTAGTTCAATGGGCAATGGATCCCACCTCCACTTCCCTTCCCATTTCAAGCAGAACAGTGAAGTCTCTTACTGAGGTTGAAGCCTTTGCTCTAAAGGCTAATGAGTTGAAATCTGTAACTAGTCAGTTCCACTTCCAGCATCTCAATAGCAAGCAATTCCAACTCTCAGTGAGGTTCTACTCCCATCAATGGAATGTTTGGGCAGCCTACAAAGTACAAGAAGCTTGGCAGGATTACCGTGAAAGAAAGCGGAGGGGGGTGAGAGGAGATGGCAGGTTTCAAGATGCATTGGCCAAAACGGCTGGCGCCTCGGTGGGCTTTGGCGCCACTCTGTATGCATCCATATTCATATCCCATCTACTGCAAGTGGTGCAGCGTGATCAACATCAGGAAACTACCCAACTCACCCAAGTGATGACACTACCGCCGCCTCCAAAGCCAGACGATGAGCCAGACAGCCCAAACTTCACAATCTTGAATCCGTAA 2133 43.23 MGSQIPKSTRFGHPTSDFHDKYGSYQNGSRLSPGSILESIERKFLSAYKSFRRIITHLSFKHPGDQSVKKPKFWKKILDPQKPFLQQWNKIFVLSSVIAVAVDPLFFYIPVINGERQCLTIDRQLMIIACVLRSVMDLFYVLHMIFEFRTGFLPPSLPVFGSGELIEDPAAIAKRYLFSNFLIDILSVLPLPQLLVLAIIPAARGPVPLKTKDLVKIAVLLQYVPRLLRIYPLYREVTRTVGILTETAWSGAAFNLLIYMQVSHVVGAIWYLLSVERQAKCWVEACRKDKCKDNFLYCGNQRRQIQPYIDQYCSPKESEDGKTFNFGMYVEALKFQLTSTTSFRRKFFYSFWWALRNVSSSGQNLQVSNYMGEVFFAVFIAILGLVLFALLISNIQKYLQSATVKVEQMRINRRDAEHWMAHRMLPEDLRQRIRRYDQYKWQLNRGVKEEELIGNLPKDLRRDIKRHLCYALLKKVPLFSGMDKQLLDAMCEYLKPVLFTEKSFILQEGDPIDMVLFIMKGKLATIITYGWKNDTLSGVLNAGDFCGEELVQWAMDPTSTSLPISSRTVKSLTEVEAFALKANELKSVTSQFHFQHLNSKQFQLSVRFYSHQWNVWAAYKVQEAWQDYRERKRRGVRGDGRFQDALAKTAGASVGFGATLYASIFISHLLQVVQRDQHQETTQLTQVMTLPPPPKPDDEPDSPNFTILNP 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15560949 15565387 + CmoCh14G021680.1 Cmo14g02168 397434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02168 710 Gene3D Jelly Rolls 476 593 IPR014710 -
Cmo14g02168 710 Gene3D - 91 402 - -
Cmo14g02168 710 CDD CAP_ED 478 609 IPR000595 -
Cmo14g02168 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 50 705 - -
Cmo14g02168 710 SUPERFAMILY cAMP-binding domain-like 407 593 IPR018490 -
Cmo14g02168 710 Pfam Ion transport protein 87 406 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo14g02168 710 SMART cnmp_10 478 611 IPR000595 -
Cmo14g02168 710 Gene3D Helix hairpin bin 403 469 - -
Cmo14g02168 710 SUPERFAMILY Voltage-gated potassium channels 79 400 - -
Cmo14g02168 710 ProSiteProfiles cAMP/cGMP binding motif profile. 478 562 IPR000595 -
Cmo14g02168 710 MobiDBLite consensus disorder prediction 687 710 - -
Cmo14g02168 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 1 50 705 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01044 Cmo14g02168 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02168 Cmo-Chr14:15560949 Cmo05g01050 Cmo-Chr5:8475255 0 dispersed
Cmo14g02168 Cmo-Chr14:15560949 Cmo16g00069 Cmo-Chr16:313082 1.66E-108 wgd
Cmo14g02168 Cmo-Chr14:15560949 Cmo18g01335 Cmo-Chr18:12659717 0 wgd
Cmo14g02168 Cmo-Chr14:15560949 Cmo02g01137 Cmo-Chr2:6889071 0 wgd
Cmo14g02168 Cmo-Chr14:15560949 Cmo06g01044 Cmo-Chr6:8113022 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02168 K05391 - csv:101206492 1098.19