Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02175 ATGAAGATTGAAGATGGGTTGCGGAGTGTTGGTGGGAAGGATGAGGATAAGACAGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCTGTGAGGAACGAGGCGAATTTGCAGAACAAGCTGTCGGATCTGGTGGAGAGACCCAACGCTTCGAATTTTAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCAAATTCTGGGGACTGGGTTTTGGGATGGGGAGATGGATTGTGTAGAGATCCTAGGGAAGGAGAGGAAACGGAAGCTACACAGATTCTTAGTCTTCGGCTTGAAGACGAGAGCCAACAGAGGATGAAGAAAACAGCACTGCAGAAGCTTCACACGCTGTTTGGAGGCTCTGATGAGGACAATTACGCCCTTGGATTGGACAGAGTCACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCCTTCCCTAGTGGAGAGGGGGGCCCTGGGAAGTGTTTGGCGTCCAGGAAACATATCTGGCTTTTGGATGTGCTCAATTCGCCATCGGAGTATTGTGTGAGATCGTATCTGGCAAAATCCGCCGGGATTCGGACGGTTGTTCTGGTGCCAACCGATGTCGGAGTAGTTGAATTGGGTTCTGTGAGATCTGTGAGTGAGAGCTTAGAGTTGGTGCAGTTGGTTAGATCATTGTTTTCATCCCAACCTTCCCTCGACCGAGTGAGGTCGTCGGCAACAATGTCCATGATGGCTGAAAGAAAAGATGAAAACGCCCCATTTGTGAGTTTGGGAATTGCTGAAAGAGGAGGGGGGAATCCTAAGGTTTTTGGGCAGACTTTGAACTCGGGGAACCTGGGTCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGATAGGTCATGGGAAGCATGTGCCAATGGAGGTAGAATTCAGTTTCAAAGCCCCCGAAATGGCCTTCGCAGTCCGAGTTTGGCACATGTTCATGGTCTCAAGCAAGGGAACACTACAGAAGTTTATGGCTCTCCAACTCCACCAGCAAATAATAATCACGAGCAGCTAGTCAATGGAGTTAGAGATGAATATTGTCTCAATCCCTATCAGTCGCAAAAGCTGGCCCAAATGCAAATTGATTTTTCTGGAGCAACATCGAGGCCTTCTGTGATTAACCGTGTAGGTGTGGATTCGGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGCACCGATGAAAGACGACCTCGCAAACGAGGCAGAAAGCCTGCAAATGGCAGGGAGGAACCACTGAATCACGTTGAGGCAGAGAGGCAGCGCCGTGAAAAGTTGAACCAACGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCGAAAATGGACAAAGCTTCATTGCTGGGAGATGCCATTGCTTACATTAACGAGCTTCAAACAAAAGTGAAGGCCATGGAAGTTGAACGTGAGAAATCGGGGGTCACCTCAAGTGAAGCAACCCCGTCGGAGGTGAACCCAGAAATTGAAAAGAAAGACCAATTCCTTGATGTCGATATCGACATTGAAGCTGGTCATGACGAAGTGATCGTGAAGGTTAGCTGCCCATTAGAGTCACATCCTGCATCAAGAGTAATCAAGGCCATGAAAGAGGCTCAGATCAACGTTGTTGATTCAAAACTGTGTGAAGCAAATGATACGGTCGTGCACACATTTGTGATAAAGTCTCCGGGATCGGAGCAGTTGACGAAGGAACAGTTGATAGCTGCATTTTCCCGGGACTCGACTCCGTTACACCCTCCGCTATCAACAGTTGGGTAA 1848 47.67 MKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMSCSVSNENLFMAVRNEANLQNKLSDLVERPNASNFSWNYAIFWQLSHSNSGDWVLGWGDGLCRDPREGEETEATQILSLRLEDESQQRMKKTALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPSGEGGPGKCLASRKHIWLLDVLNSPSEYCVRSYLAKSAGIRTVVLVPTDVGVVELGSVRSVSESLELVQLVRSLFSSQPSLDRVRSSATMSMMAERKDENAPFVSLGIAERGGGNPKVFGQTLNSGNLGRSHFREKLAIRKMDDRSWEACANGGRIQFQSPRNGLRSPSLAHVHGLKQGNTTEVYGSPTPPANNNHEQLVNGVRDEYCLNPYQSQKLAQMQIDFSGATSRPSVINRVGVDSEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQTKVKAMEVEREKSGVTSSEATPSEVNPEIEKKDQFLDVDIDIEAGHDEVIVKVSCPLESHPASRVIKAMKEAQINVVDSKLCEANDTVVHTFVIKSPGSEQLTKEQLIAAFSRDSTPLHPPLSTVG 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15597259 15599106 - CmoCh14G021750.1 Cmo14g02175 397441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02175 615 Gene3D - 432 502 IPR036638 GO:0046983
Cmo14g02175 615 MobiDBLite consensus disorder prediction 402 450 - -
Cmo14g02175 615 Pfam Helix-loop-helix DNA-binding domain 443 489 IPR011598 GO:0046983
Cmo14g02175 615 MobiDBLite consensus disorder prediction 405 450 - -
Cmo14g02175 615 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Cmo14g02175 615 SMART finulus 445 494 IPR011598 GO:0046983
Cmo14g02175 615 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 439 488 IPR011598 GO:0046983
Cmo14g02175 615 PANTHER TRANSCRIPTION FACTOR MTB1 13 608 - -
Cmo14g02175 615 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 442 501 IPR036638 GO:0046983
Cmo14g02175 615 PANTHER MYC 13 608 IPR045084 GO:0003700|GO:0006355
Cmo14g02175 615 CDD bHLH_AtAIB_like 436 509 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01033 Cmo14g02175 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00657 Cmo-Chr6:3318070 Cmo14g02175 Cmo-Chr14:15597259 1.00E-69 dispersed
Cmo14g02175 Cmo-Chr14:15597259 Cmo19g00079 Cmo-Chr19:435281 1.16E-97 dispersed
Cmo02g01849 Cmo-Chr2:10454928 Cmo14g02175 Cmo-Chr14:15597259 6.36E-06 transposed
Cmo14g02175 Cmo-Chr14:15597259 Cmo06g01033 Cmo-Chr6:8075295 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11097 PF14215 bHLH-MYC_N 1.90E-53 CL0161 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02175 - - csv:101208845 1067.76