Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02213 ATGGGCGGGAGAGATGACGAGTTGCGGCTGACTTTGAGTTTAGGTTTGGGAGTTACGACTCGGCCTTCTTTTCAGCCGACTCACATTCACAGGCCATCGAACTCCATGCATAATCACATCCGCAATGGTTCTTGGAATGAGCTCTTTCAATTTTCTGGTAGTTTATTGATTTCCTGTCTTCTTATCTTTTCATTTGCATTTTATCTATTGCTCTACTGTGTTTCTTCGGAGTTTTTTGTGTTGGATCCGTTACGATTTGAAGGATTGTATCTCATGCGAAGATTCTGCTCCGATTTCGCGATTTTCGTCGTCAGAACTGATGATTTTGATAATTTACGAGTATTCGTTCGATTGAATCGAAATGCCGATTCTAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTGCCGACTGTCGTGGACGGCGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACCGTTTCTAGCATCAGTGGAAAGAGGAGCGAGAGAGAAGCCGAGGCGGAGGCGGAGGCTGAGGCTGAGGCTGAGGCCGAGAGAGCCTCGTGCTCGCAAGGGAGCGATGATGAAGACGGCGGAGGCGGCGACGCCTCGAGAAAGAAGCTGAGGCTATCAAAGGAGCAGTCGATGGTTCTTGAGGAGACCTTCAAAGAGCACAATACTCTCAATCCAAAGCAAAAGCTGGCACTTGCGAAGCAGCTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGTATGGACATTTTAGTCTGCTTGGTTTCAGAACTTAGAAGTCAATTCATTCAGTATCCAGGGCTGCTAGAACCGTCTCCTCGTAAAAAGCGGAGGAGTCGTGCTCTGCCTCTGTTTTTTAGTAGGAAGGTCAAAATTGTGAAGAGAAGGTTTTATTTTGATTTTAGAGCCTTGAATTGTGTGTGTGGGATTAACTGGTGTGGAAATTGGGTGGGCAGGACGAAACTGAAGCAGACAGAAGTGGATTGCGAGTACTTGAAGAGGTGCTGCGAGAATCTAACAGGGGAGAACAGAAGGCTGCAGAAGGAGGTGCAGGAGTTGAGAGCGCTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCTACCACCCTCACCATGTGTCCTCAGTGTGAGCGTGTGGCAGTTTCCTCATCTTCTTCCACCACCTGCCATCCAGCAGCGGCTGCTGGTGTACAGCGTCCCTCCATGCCCCTCAACCCATGGGCGGCGGTGTTGCCGATTGAACGTTGA 1269 49.01 MGGRDDELRLTLSLGLGVTTRPSFQPTHIHRPSNSMHNHIRNGSWNELFQFSGSLLISCLLIFSFAFYLLLYCVSSEFFVLDPLRFEGLYLMRRFCSDFAIFVVRTDDFDNLRVFVRLNRNADSRSFLRGIDVNRLPTVVDGEEENGVSSPNSTVSSISGKRSEREAEAEAEAEAEAEAERASCSQGSDDEDGGGGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRASMDILVCLVSELRSQFIQYPGLLEPSPRKKRRSRALPLFFSRKVKIVKRRFYFDFRALNCVCGINWCGNWVGRTKLKQTEVDCEYLKRCCENLTGENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTTCHPAAAAGVQRPSMPLNPWAAVLPIER 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15730305 15731943 - CmoCh14G022130.1 Cmo14g02213 397479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02213 422 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 6 251 - -
Cmo14g02213 422 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 317 416 - -
Cmo14g02213 422 MobiDBLite consensus disorder prediction 142 201 - -
Cmo14g02213 422 CDD homeodomain 200 251 IPR001356 GO:0003677
Cmo14g02213 422 SUPERFAMILY Homeodomain-like 187 251 IPR009057 -
Cmo14g02213 422 PANTHER - 317 416 - -
Cmo14g02213 422 Pfam Homeodomain 200 251 IPR001356 GO:0003677
Cmo14g02213 422 MobiDBLite consensus disorder prediction 145 160 - -
Cmo14g02213 422 Gene3D - 206 252 - -
Cmo14g02213 422 SMART HOX_1 198 260 IPR001356 GO:0003677
Cmo14g02213 422 Coils Coil 341 361 - -
Cmo14g02213 422 PANTHER - 6 251 - -
Cmo14g02213 422 MobiDBLite consensus disorder prediction 176 201 - -
Cmo14g02213 422 Coils Coil 161 181 - -
Cmo14g02213 422 Pfam HD-ZIP protein N terminus 119 166 IPR006712 GO:0005634
Cmo14g02213 422 Pfam Homeobox associated leucine zipper 328 362 IPR003106 GO:0006355|GO:0043565
Cmo14g02213 422 SMART halz 328 371 IPR003106 GO:0006355|GO:0043565
Cmo14g02213 422 ProSiteProfiles 'Homeobox' domain profile. 196 256 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02213 Cmo-Chr14:15730305 Cmo16g01173 Cmo-Chr16:8354962 1.65E-40 dispersed
Cmo14g02213 Cmo-Chr14:15730305 Cmo06g01004 Cmo-Chr6:7884147 1.69E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11100 PF00046 Homeodomain 4.90E-15 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02213 K09338 - csv:101222132 186.808