Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02227 ATGCCCCGTTTCCACCATCATCATTATTATTATTATTATTGTTCTCTTCTCTTTCCCGCCCTTCTTTCTCTTTCACTTACCCCTTGCTTTTGCTTCCATCCCAAATCCTTCAATGTCTCCATGTACCAATCCTATGATCCCGATTGGTCCCCGGCCATCGCCACCTGGTACGGTACCCCCAATGGTGCCGGGAGCGATGGAGGTTCCTGTGGGTATGGAAAAGCGGTCGAGGAACCACCATTTTCGTCGTTAATCGCCGCAGGTGGCCCTTCTTTGTACAAATCCGGCAAAGCCTGTGGAGCTTGTTATCAGGTAAATGTGGCTTTAACTACATGTGATCCCAATGAAATGCCCCATTATTGTATACCAAATGAATGGATTATCTATCAGGTGAAGTGCTCCGGAGAAGGCGCATGTTCAGGGGGTCCGGTGACGGTGGTTATAACTGATAGTTGTCCGGGCGGCTCCTGTGCTTCCGACTCTGTCCACTTCGACCTCAGTGGCACTGCTTTTGGTGCTATGGCTGCTACTGGGCGGGCCGATGAACTCCGCAGTCTCGGCGTTTTGCACATTCAACATAAGAGTGTGGAATGCAATTACCCGGGAACCTCGATCAACTTCATCGTGGACTCAGGGTCGAACCCAAACTACTTCGCAGTTCTGATCGAATACGAAGATGGAGATGGAGAGCTAGGTTTAGTGGAGCTGAAACCGGCGCTCAACTCGTACTCATGGATTCCAATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTGGACTCTGCCTCTGCGCTTCAACCTCCCTTCTCCCTCAGGCTCACTGCCCTCGACTCCGGCAAGACCGTGGTGGCTAACAACGTAATTCCGGTCGGGTGGCAGCCCGGACAGACTTATAGATCAGTGGTCAACTTCGATACATAA 918 51.2 MPRFHHHHYYYYYCSLLFPALLSLSLTPCFCFHPKSFNVSMYQSYDPDWSPAIATWYGTPNGAGSDGGSCGYGKAVEEPPFSSLIAAGGPSLYKSGKACGACYQVNVALTTCDPNEMPHYCIPNEWIIYQVKCSGEGACSGGPVTVVITDSCPGGSCASDSVHFDLSGTAFGAMAATGRADELRSLGVLHIQHKSVECNYPGTSINFIVDSGSNPNYFAVLIEYEDGDGELGLVELKPALNSYSWIPMKQSWGAVWKLDSASALQPPFSLRLTALDSGKTVVANNVIPVGWQPGQTYRSVVNFDT 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15798088 15799270 + CmoCh14G022270.1 Cmo14g02227 397493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02227 305 PANTHER EXPANSIN-B3 20 107 - -
Cmo14g02227 305 Pfam Lytic transglycolase 86 188 IPR009009 -
Cmo14g02227 305 Gene3D - 200 303 IPR036749 -
Cmo14g02227 305 Gene3D - 35 199 IPR036908 -
Cmo14g02227 305 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cmo14g02227 305 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Cmo14g02227 305 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Cmo14g02227 305 PRINTS Expansin/Lol pI family signature 285 299 IPR007118 GO:0005576
Cmo14g02227 305 SUPERFAMILY Barwin-like endoglucanases 48 223 IPR036908 -
Cmo14g02227 305 PANTHER EXPANSIN-B2-RELATED 20 107 - -
Cmo14g02227 305 PANTHER EXPANSIN-B2-RELATED 128 304 - -
Cmo14g02227 305 SUPERFAMILY PHL pollen allergen 204 299 IPR036749 -
Cmo14g02227 305 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 216 299 IPR007117 -
Cmo14g02227 305 Pfam Expansin C-terminal domain 205 288 IPR007117 -
Cmo14g02227 305 PANTHER EXPANSIN-B3 128 304 - -
Cmo14g02227 305 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 203 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01949 Cmo-Chr11:13441695 Cmo14g02227 Cmo-Chr14:15798088 4.49E-67 dispersed
Cmo14g02227 Cmo-Chr14:15798088 Cmo20g00212 Cmo-Chr20:1024601 2.41E-62 dispersed
Cmo14g02227 Cmo-Chr14:15798088 Cmo06g00979 Cmo-Chr6:7713997 4.42E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02227 - - csv:101219528 449.899