Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02238 ATGGAAACTGGATCACAAATATCAGGCCTTCCCAGTTATCAACTTCAACTCTCCTTCCACCTCTCAAATGCACCTCCTCTTCCCCAACCCATCCACCAAATGGGATTCGTTCACTTCCAAGACCACACCCAGGTTTTGAGCTTCTTGTCACCCAATACCGCCGCCACCGCCACCATGCCACCTGCCTTTACAACTTCTGCTCACGCCCATCTCGTTAGTAGACCTTCTTGGAGCAACGAGCAGGTGGGAACACAGGATCCGAAGCCCGGCAACGACGAGAACTGCAATGGTAGCGCTAGCGACGGCAGCAATTCATGGTGGAGAAACACAAATGCAGATAAGAGTAAAGTGAAGGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTGCTCGACGATGGCTATAAATGGAGAAAATATGGCCAGAAAGTCGTCAAGAACAGCCTTCATCCTAGAAGCTACTACCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGGGTGGAGCGACTGTCGGAAGATTGCAGGATGGTGATAACCACGTACGAAGGTAGACACAACCACTCCCCTTGCGACGACTCCAATTCTTCGGAGCACGAGCCCTTTACATCCTTTTGA 642 50.93 METGSQISGLPSYQLQLSFHLSNAPPLPQPIHQMGFVHFQDHTQVLSFLSPNTAATATMPPAFTTSAHAHLVSRPSWSNEQVGTQDPKPGNDENCNGSASDGSNSWWRNTNADKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15875010 15876596 + CmoCh14G022380.1 Cmo14g02238 397504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02238 213 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 27 209 - -
Cmo14g02238 213 MobiDBLite consensus disorder prediction 74 111 - -
Cmo14g02238 213 Gene3D WRKY domain 125 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo14g02238 213 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 27 209 IPR044810 GO:0003700
Cmo14g02238 213 MobiDBLite consensus disorder prediction 194 213 - -
Cmo14g02238 213 ProSiteProfiles WRKY domain profile. 134 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g02238 213 SUPERFAMILY WRKY DNA-binding domain 131 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo14g02238 213 Pfam WRKY DNA -binding domain 140 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo14g02238 213 SMART WRKY_cls 139 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00599 Cmo-Chr2:3670966 Cmo14g02238 Cmo-Chr14:15875010 1.15E-46 dispersed
Cmo06g00963 Cmo-Chr6:7545161 Cmo14g02238 Cmo-Chr14:15875010 5.17E-114 dispersed
Cmo14g01493 Cmo-Chr14:12003302 Cmo14g02238 Cmo-Chr14:15875010 6.67E-34 dispersed
Cmo14g02238 Cmo-Chr14:15875010 Cmo20g01135 Cmo-Chr20:11017198 1.88E-47 dispersed
Cmo14g02238 Cmo-Chr14:15875010 Cmo03g01049 Cmo-Chr3:7826027 1.97E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11107 PF03106 WRKY 1.30E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02238 - - cmax:111472906 366.311