Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02239 ATGAAGAGGATTCCAGAGTCAAAACCACTTCCGTTATTACTGCCCATAGAGATGCTTCCAGAATCAAAGGTTCTTCCGGGAAATTTGTGTGTTTTGGATGATATACCAAAAGCACATGTGGCCTCAGCCAAGCAAGCTGGCCATTGGTCGAATATGCACTCAGCTAAGGTAAGAGACGTGGGAAGATCAATTGGACAAGGACTTCAAGATCCAGAAGTTTCTGCACCTATACGGATATCAAAGGGAAAATCCTCTTTCTTGGGTCAGGAAGAACCAAAGCGTGGTGTCACTTTAAAGGGTAGTAGATCTTTAATTGAGGAAGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCGCCAGAGCCCGTGGATATGGATCTAATGAGAACTGTTTATGTACCCATAGGACAAAATAAACCAGACCCCTGTTGCTTGATGAAGAGTTTTTCCGTGAATGGCCCCTTTCTTGAGGATCTTTCAATCCGGGTTCCAGACAAGAAACCAAGCCCTGCTGCTCTCTCCCCTGCAGAAAGCTTAGTTGACGAGCCGCATGACTTGGGTGTTTTATCTACCCCCTTTTCAATTCCTCGTGCATCACAAATTACAGAAACCTCTCTCCTTCCCCCAGATTCTGAGGAGAAGGAATGTGTTTGGGATGCTTCTTTGCCCCCAAGTGGCAATGTAAGTCCACACAGTAGCATTGATAGTAGCGGAGTTGTCACAGCTATGAGCATAGTTAATAGCTGTTCTAGCACATACCGAAGTGATGGAATGAGTATTGAAAGGAACTGTGAGAGTACTAAAGGAAGCATTAGAGGAGACTCTCTCGAGAGTGCAAAAACAAGTATTAGTCGAGCTAGTGATAGCAGTGGTCTCAGTGATGATAGTTGTTGGAGCAACATTACAGGAAGTGCTAATAAGCCCCACAAAGGAAACGATCCTAGGTGGAAAGCCATTCTTGCTATTCGAGCAAGAGATGGAATATTAGGCATGAACCATTTTAGACTGCTGAAAAGACTTGGATGTGGTGATATTGGTAGTGTTTACCTCTCAGAGCTAAGTGGGACTCGCTGTTTTTTTGCAATGAAAGTAATGGACAAGGCATCACTTGCTATAAGGAAGAAGTTAACGAGAGCTCAGACAGAGAGGGAGATCTTGCAGTTACTTGACCATCCATTTCTGCCGACGTTGTACACCCATTTTGAAACCGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCAGGGGGAGACCTGCACACTTTGAGGCAACGGCAGCCAGGGAAACACTTCTCTGAGTATGCTGCGAGGTTTTATGCAGCAGAGGTTTTACTGGCCCTCGAGTATCTTCACATGCTGGGAGTTGTTTACAGAGACTTGAAACCAGAGAATGTACTGGTTCGTGATGATGGCCACATAATGCTCTCAGATTTTGACCTTTCACTAAGATGTGCAGTGTCACCCACCCTAATAAAAACCTCACATGATTCTGACCCATCGAAACGAGCTGCATTCTGTGTCCAGCCTGCCTGTATCGAGCCATCATCAGCTTGCATCCAACCTGCATGCTTTATTCCACGACTCTTCCCTCAGAAAAGCAAAAAGAGAAGTCCCAAGCCTCGAAGCGAGCTAAGGTTGCAATCCAGTACTTTTCCTGAGCTGGTGGCAGAGCCGACCGCCGCCCGATCCATGTCTTTTGTTGGCACCCATGAATACCTAGCCCCTGAAATCATTAAAGGAGAGGGACATGGAAGTGCTGTTGATTGGTGGACTTTTGGCATTTTCTTGCATGAACTATTGTATGGAAAAACCCCATTCAAAGGATCAGGAAACAGAGCCACACTATTCAATGTCGTAGGGCAGCAACTGAAGTTCCCAGAGTCTCCAGCAACTAGTTATGCTAGCCGAGATCTTATTCGAGGTTTGCTAGTAAAGGAGCCACAACATCGGCTCGGAGTTAAGAGGGGAGCAGCCGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATACGATGCAGCACGCCCCCAGAAGTGCCAAGACCTATGGAGGCCGAACTGCCCAAGTTTGGGGTAGTTGACGCAACAGGCGTTAGCAGCAGCAGTAAGAGGATGGTTGGCACAGATGTTGTCAAGTCTGGTGGTCAATATCTTGACTTCGAGTTCTTTTAA 2181 46.31 MKRIPESKPLPLLLPIEMLPESKVLPGNLCVLDDIPKAHVASAKQAGHWSNMHSAKVRDVGRSIGQGLQDPEVSAPIRISKGKSSFLGQEEPKRGVTLKGSRSLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDPCCLMKSFSVNGPFLEDLSIRVPDKKPSPAALSPAESLVDEPHDLGVLSTPFSIPRASQITETSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSSGVVTAMSIVNSCSSTYRSDGMSIERNCESTKGSIRGDSLESAKTSISRASDSSGLSDDSCWSNITGSANKPHKGNDPRWKAILAIRARDGILGMNHFRLLKRLGCGDIGSVYLSELSGTRCFFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSHDSDPSKRAAFCVQPACIEPSSACIQPACFIPRLFPQKSKKRSPKPRSELRLQSSTFPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGAAEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDATGVSSSSKRMVGTDVVKSGGQYLDFEFF 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15877005 15881593 - CmoCh14G022390.1 Cmo14g02239 397505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02239 726 SMART serkin_6 334 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g02239 726 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 57 726 - -
Cmo14g02239 726 MobiDBLite consensus disorder prediction 265 290 - -
Cmo14g02239 726 CDD STKc_phototropin_like 333 685 - -
Cmo14g02239 726 ProSiteProfiles Protein kinase domain profile. 334 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g02239 726 PANTHER FLIPPASE KINASE 1-RELATED 57 726 - -
Cmo14g02239 726 Pfam Protein kinase domain 335 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g02239 726 Pfam Protein kinase domain 563 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo14g02239 726 Gene3D Transferase(Phosphotransferase) domain 1 418 684 - -
Cmo14g02239 726 MobiDBLite consensus disorder prediction 83 119 - -
Cmo14g02239 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Cmo14g02239 726 Gene3D Phosphorylase Kinase; domain 1 334 417 - -
Cmo14g02239 726 MobiDBLite consensus disorder prediction 204 235 - -
Cmo14g02239 726 SUPERFAMILY Protein kinase-like (PK-like) 316 693 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02239 Cmo-Chr14:15877005 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo14g02239 Cmo-Chr14:15877005 Cmo06g00965 Cmo-Chr6:7557283 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74890 PF00069 Pkinase 5.80E-36 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02239 - - csv:101217551 1372.07