Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g00039 | ATGGCGGACCGCCGGAAATGGCGACGTCGCCGGAAAGACAAGCGTAGGAAAAAAGGCGAAAAAGGAATCCGCGTAGTTGCAATGGCTACGGCAGCTCCACCCTGCGATGGTGGGGAACCTTCCTCTGCTCATTTTCAACTGTTCTTACGCTTACACTCAGTCCATTTTACTCTTATGATTGGTCAGCAGAGTATGAGCTCTTCATCAGCTCAGCTCTATGCATCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGGTAATGCCTTCGGTACTCGACTCGATACCAGCATATCGCCTATTATAAAAGTGGACGACTGTGTAGACAATAAACCTGAGTTCGTTCCTTTCGAATCGATGGATCATCACGAGAGCAGTCAAGAAACGAACAAGCCAATCGATGATAAGGTACAACGTCGTTTAACACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTACAGCAGTTAGAAACTAGCCGTTTGAAGCTGGCACAGTTGGAGCAGGAGCTAGAAAGAACCAAACAGAAGGGTGTATACACAGCAAGCTGCTTAGCAGATACCAGCCACTTGGGATTCAGCAGATTGGTAAACCCAGGGATTGCTGCATTTGAGATAGAATACAATCACTGGGTTGAAAAGCAAGAGAGACAGATCACTGAACTCAGAAAGGCATTGCAGCAAGTTCATATAATAACTGATACAGAACTCCAAATTTTAGTGGAAAGCGGCTTAAACCATTACCATAATCTGTTTTGCATGAAAGCCAATGCTGCAAAGGCTGATGTTTTCTATTTAATGTCTGGTGTATGGAGATCATCAGCAGAGCGTTTTTTCCTGTGGATTGGAGGATTTCGGCCATCGGAGCTGCTAAACGTGCTGACGCCATACTTTGAGGCATTAAATGAACAACAACAGAGCGCTATTCACAATTTGCAGCAGTCGTCTCGGCAAGCTGAAGACGCGCTCTCACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAGCGATCCTATAGGAAGCTATATTTCTGAGATGGGTGATGGAATGGAGAAAGCAGAAGCATTGGAGAGCTTGGTAAGGCAGCCGAGTGTGTGCTACTCTTTTCTGGAACAGGCAGACCATCTGAGGCAACAAACTTTGAAGAGAATGTCCCACATCCTAAGTACGAAACAAGCGGCGCAAGGGTTGGTCGCTTTAGGCGAGTACTTCCACCGTCTCCGTATTCTGAGCTCCCTCTGGGCCACTCGACCTCGTGAACCTGCGTAG | 1305 | 46.74 | MADRRKWRRRRKDKRRKKGEKGIRVVAMATAAPPCDGGEPSSAHFQLFLRLHSVHFTLMIGQQSMSSSSAQLYASRMGIYEPFHQINSWGNAFGTRLDTSISPIIKVDDCVDNKPEFVPFESMDHHESSQETNKPIDDKVQRRLTQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKGVYTASCLADTSHLGFSRLVNPGIAAFEIEYNHWVEKQERQITELRKALQQVHIITDTELQILVESGLNHYHNLFCMKANAAKADVFYLMSGVWRSSAERFFLWIGGFRPSELLNVLTPYFEALNEQQQSAIHNLQQSSRQAEDALSQGMEKLHQNLSLSIASDPIGSYISEMGDGMEKAEALESLVRQPSVCYSFLEQADHLRQQTLKRMSHILSTKQAAQGLVALGEYFHRLRILSSLWATRPREPA | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 247678 | 251242 | - | CmoCh15G000390.1 | Cmo15g00039 | 397547 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g00039 | 434 | SUPERFAMILY | Leucine zipper domain | 139 | 179 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo15g00039 | 434 | PANTHER | TRANSCRIPTION FACTOR TGA7 | 65 | 433 | - | - | |
Cmo15g00039 | 434 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 65 | 433 | - | - | |
Cmo15g00039 | 434 | Gene3D | - | 138 | 187 | - | - | |
Cmo15g00039 | 434 | Coils | Coil | 158 | 185 | - | - | |
Cmo15g00039 | 434 | Coils | Coil | 310 | 330 | - | - | |
Cmo15g00039 | 434 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 142 | 157 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo15g00039 | 434 | Pfam | bZIP transcription factor | 138 | 177 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo15g00039 | 434 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 137 | 181 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo15g00039 | 434 | Coils | Coil | 220 | 240 | - | - | |
Cmo15g00039 | 434 | ProSiteProfiles | DOG1 domain profile. | 209 | 429 | IPR025422 | GO:0006351|GO:0043565 | |
Cmo15g00039 | 434 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cmo15g00039 | 434 | Pfam | Seed dormancy control | 226 | 303 | IPR025422 | GO:0006351|GO:0043565 | |
Cmo15g00039 | 434 | SMART | brlzneu | 135 | 199 | IPR004827 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo15g00039 | Cmo-Chr15:247678 | Cmo16g00731 | Cmo-Chr16:3639103 | 1.51E-119 | dispersed | |
Cmo15g00039 | Cmo-Chr15:247678 | Cmo04g03125 | Cmo-Chr4:21686648 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11110 | PF14144 | DOG1 | 3.80E-28 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g00039 | K14431 | - | csv:101217648 | 630.557 |