Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00039 ATGGCGGACCGCCGGAAATGGCGACGTCGCCGGAAAGACAAGCGTAGGAAAAAAGGCGAAAAAGGAATCCGCGTAGTTGCAATGGCTACGGCAGCTCCACCCTGCGATGGTGGGGAACCTTCCTCTGCTCATTTTCAACTGTTCTTACGCTTACACTCAGTCCATTTTACTCTTATGATTGGTCAGCAGAGTATGAGCTCTTCATCAGCTCAGCTCTATGCATCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGGTAATGCCTTCGGTACTCGACTCGATACCAGCATATCGCCTATTATAAAAGTGGACGACTGTGTAGACAATAAACCTGAGTTCGTTCCTTTCGAATCGATGGATCATCACGAGAGCAGTCAAGAAACGAACAAGCCAATCGATGATAAGGTACAACGTCGTTTAACACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTACAGCAGTTAGAAACTAGCCGTTTGAAGCTGGCACAGTTGGAGCAGGAGCTAGAAAGAACCAAACAGAAGGGTGTATACACAGCAAGCTGCTTAGCAGATACCAGCCACTTGGGATTCAGCAGATTGGTAAACCCAGGGATTGCTGCATTTGAGATAGAATACAATCACTGGGTTGAAAAGCAAGAGAGACAGATCACTGAACTCAGAAAGGCATTGCAGCAAGTTCATATAATAACTGATACAGAACTCCAAATTTTAGTGGAAAGCGGCTTAAACCATTACCATAATCTGTTTTGCATGAAAGCCAATGCTGCAAAGGCTGATGTTTTCTATTTAATGTCTGGTGTATGGAGATCATCAGCAGAGCGTTTTTTCCTGTGGATTGGAGGATTTCGGCCATCGGAGCTGCTAAACGTGCTGACGCCATACTTTGAGGCATTAAATGAACAACAACAGAGCGCTATTCACAATTTGCAGCAGTCGTCTCGGCAAGCTGAAGACGCGCTCTCACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAGCGATCCTATAGGAAGCTATATTTCTGAGATGGGTGATGGAATGGAGAAAGCAGAAGCATTGGAGAGCTTGGTAAGGCAGCCGAGTGTGTGCTACTCTTTTCTGGAACAGGCAGACCATCTGAGGCAACAAACTTTGAAGAGAATGTCCCACATCCTAAGTACGAAACAAGCGGCGCAAGGGTTGGTCGCTTTAGGCGAGTACTTCCACCGTCTCCGTATTCTGAGCTCCCTCTGGGCCACTCGACCTCGTGAACCTGCGTAG 1305 46.74 MADRRKWRRRRKDKRRKKGEKGIRVVAMATAAPPCDGGEPSSAHFQLFLRLHSVHFTLMIGQQSMSSSSAQLYASRMGIYEPFHQINSWGNAFGTRLDTSISPIIKVDDCVDNKPEFVPFESMDHHESSQETNKPIDDKVQRRLTQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKGVYTASCLADTSHLGFSRLVNPGIAAFEIEYNHWVEKQERQITELRKALQQVHIITDTELQILVESGLNHYHNLFCMKANAAKADVFYLMSGVWRSSAERFFLWIGGFRPSELLNVLTPYFEALNEQQQSAIHNLQQSSRQAEDALSQGMEKLHQNLSLSIASDPIGSYISEMGDGMEKAEALESLVRQPSVCYSFLEQADHLRQQTLKRMSHILSTKQAAQGLVALGEYFHRLRILSSLWATRPREPA 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 247678 251242 - CmoCh15G000390.1 Cmo15g00039 397547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00039 434 SUPERFAMILY Leucine zipper domain 139 179 IPR046347 GO:0003700|GO:0006355
Cmo15g00039 434 PANTHER TRANSCRIPTION FACTOR TGA7 65 433 - -
Cmo15g00039 434 PANTHER TRANSCRIPTION FACTOR TGA9 65 433 - -
Cmo15g00039 434 Gene3D - 138 187 - -
Cmo15g00039 434 Coils Coil 158 185 - -
Cmo15g00039 434 Coils Coil 310 330 - -
Cmo15g00039 434 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 142 157 IPR004827 GO:0003700|GO:0006355
Cmo15g00039 434 Pfam bZIP transcription factor 138 177 IPR004827 GO:0003700|GO:0006355
Cmo15g00039 434 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 137 181 IPR004827 GO:0003700|GO:0006355
Cmo15g00039 434 Coils Coil 220 240 - -
Cmo15g00039 434 ProSiteProfiles DOG1 domain profile. 209 429 IPR025422 GO:0006351|GO:0043565
Cmo15g00039 434 MobiDBLite consensus disorder prediction 1 21 - -
Cmo15g00039 434 Pfam Seed dormancy control 226 303 IPR025422 GO:0006351|GO:0043565
Cmo15g00039 434 SMART brlzneu 135 199 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00039 Cmo-Chr15:247678 Cmo16g00731 Cmo-Chr16:3639103 1.51E-119 dispersed
Cmo15g00039 Cmo-Chr15:247678 Cmo04g03125 Cmo-Chr4:21686648 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11110 PF14144 DOG1 3.80E-28 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00039 K14431 - csv:101217648 630.557