Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo15g00081 | ATGACCATAAAGAAAGTGACAAGACAAGAACATGATTGCGATTACTTTGTTGCATTAAAATCCTACAACACAGGGGAAGCTTTGCACTTTCTTCCAATCCCTAAACTTCATCTTCTGTTCATACCCCCTTTTTGTGTTCTTTTCACTGCTCCAATGGAGGAAAATTCCAGCCTTGTCGCAGAATCAACTCTCACAGACGCCATGGAAGCAGAGCCTCAAGAAGAAGAAAGAGACCCAGAAAGCAATCCCTTGAACGAACCCCTTCTCAAGAGAAGCAGAACTCTCTCTTCTAGTCCTCTTGCCATTGTTGGGGCCAAGGTTTCTCTGATTGAAAGCTTGGATTACGAGATCAATGAGAACGATCTGTTTAAGCACGATTGGAGAAGCAGATCCAAAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACATTGGCTTGTCTTGTCGGGCTTCTTACAGGGATCATTGCCACTCTCATCAATCTCGCCATTGAAAATATTGCTGGCTACAAGCTTTTGAAAGTGGTCGGTTACATCAAAGAAGAAAGGTACCTAATGGGATTCGCCTACTTTACCACTGCAAATTTCCTTCTCACTTTTGTTGCTGCTGTTCTCTGTGTATGCTTTGCTCCCACCGCCGCTGGGCCTGGCATACCAGAAATCAAAGCCTATCTCAATGGCATAGATACTCCTAATATGTTCGGCGCCACCACGTTGATCGTTAAGATTATTGGGAGCATTGGAGCAGTGGCTGCTGGGCTAGATCTTGGGAAAGAAGGGCCTCTAGTACACATTGGCAGCTGCATTGCTTCTTTACTTGGACAGGGCGGTCCGGATAACTATCGAGTCAAATGGACATGGCTACGCTATTTCAACAACGATCGTGATCGTCGGGATCTTATCACATGCGGGGCGTCATCAGGGGTTTGTGCAGCTTTCCGAGCCCCGGTCGGGGGTGTTCTATTTGCCCTAGAAGAGGTGGCTACATGGTGGAGGAGTGCCCTGCTGTGGAGGACCTTTTTCAGCACAGCCATTGTTGTGGTGGTGCTAAGAACTTTCATTGAAATATGCAAGGCAGGTGAGTGTGGGCTGTTCGGAGAAGGAGGGCTTATTATGTTCGATGTCAGTAGTGTTTCTGTTAGCTACCATATCATGGATATCATACCAGTTGCTATCATTGGCCTTCTTGGTGGGTTCCTTGGAAGCCTTTACAATCATCTTCTGCACAAAATCCTCAGAGTTTACAACCTCATCAATCAGAAGGGAAAAATGCACAAACTGTTACTGAGCTTAGGAGTATCACTCTTCACTTCAATCTGCCAATACAGTCTGCCATACCTTGGCCAATGCACCCCCTGCAACCCTTCTTTTCCAGGTTCCGCCTGCCCCACCAATGGCCGCTCCGGCAACTTCAAGCAATTCAACTGTCCTAAAGGCCATTACAACGACCTCGCCACCCTTCTCCTCGCCACCAACGACGACGCCGTTCGAAACATCTTCTCCACCAACACTTCCACCGAGTACCAGCCCCTTTCCCTCGTCATCTTCTTCCTCCTCTACTGCGTCTTAGGGCTTATCACTTTCGGCATCGCCGTCCCCTCCGGTCTCTTCCTTCCGATCATTTTGATGGGCTCTGGCTATGGCCGTCTCATCGGCCTCCTCATGCGGCCCTACTCCGATCTCGATCAGGGACTTTTGGCTGTTCTCGGTGCTGCCTCCTTAATGGCGGGCTCCATGCGGATGACCGTTTCCCTCTGCGTTATATTCCTGGAGCTCACCAACAATCTCCTTCTACTTCCGATTACGATGATTGTCCTTCTGATTGGAAAAACCGTCGGGGACTGTTTTAACCCTAGTATTTATGACATCATTCTACATCTGAAGGGGCTTCCGTTCTTGGACGCGAATCCGGAGACGTGGATGAGGAACATCACGGTAGGCGAACTGGCTGACGCAAAGCCGGCGGTGGTGACGCTGCGGGGATTGGAGAAAGTGTCCCGCATTGTGGAGGTTCTTAAGAACACGACGCATAATGGGTTCCCTGTTGTGGACTCGGACGCGGTGGTGCCGCCAGTAGGGATGGCAGTGGGGGCGACGGAGCTGCACGGGCTAGTGCTGAGAGCGCATTTGCTGCAGGTGCTGAAAAAGAAATGGTTCTTGAGAGAGAAGAGAAGAACAGAGGAATGGGAGGTGAGGGAGAAGTTTACATGGGTGGAATTGGCGGAGAGGGAAGGGAAGATTGAGGAGCTTGCAGTGAAGAAGGAGGAGATGGATATGTACGTTGATCTTCATCCTCTTACCAACACTACGCCTTATACAGTAATGGAGAGCATGTCTGTGGCCAAAGCTCTGGTTCTGTTCCGCCAAGTGGGGCTCCGCCATTTGCTCATCGTGCCCAAGTATGAAGCTGCTGGGGCTCCGCCTGTAATTGGGATTTTGACGAGGCAGGATTTGAGGCCGTACAACATTCTGAGTGCGTTCCCTCATCTTGCCAAGATCAAAGGCAACGAAAAACGGAACTGA | 2523 | 49.58 | MTIKKVTRQEHDCDYFVALKSYNTGEALHFLPIPKLHLLFIPPFCVLFTAPMEENSSLVAESTLTDAMEAEPQEEERDPESNPLNEPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSKVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSSVSVSYHIMDIIPVAIIGLLGGFLGSLYNHLLHKILRVYNLINQKGKMHKLLLSLGVSLFTSICQYSLPYLGQCTPCNPSFPGSACPTNGRSGNFKQFNCPKGHYNDLATLLLATNDDAVRNIFSTNTSTEYQPLSLVIFFLLYCVLGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMRPYSDLDQGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIGKTVGDCFNPSIYDIILHLKGLPFLDANPETWMRNITVGELADAKPAVVTLRGLEKVSRIVEVLKNTTHNGFPVVDSDAVVPPVGMAVGATELHGLVLRAHLLQVLKKKWFLREKRRTEEWEVREKFTWVELAEREGKIEELAVKKEEMDMYVDLHPLTNTTPYTVMESMSVAKALVLFRQVGLRHLLIVPKYEAAGAPPVIGILTRQDLRPYNILSAFPHLAKIKGNEKRN | 840 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 411910 | 415373 | + | CmoCh15G000810.1 | Cmo15g00081 | 397589 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo15g00081 | 840 | ProSiteProfiles | CBS domain profile. | 767 | 832 | IPR000644 | - | |
| Cmo15g00081 | 840 | SUPERFAMILY | Clc chloride channel | 120 | 635 | IPR014743 | - | |
| Cmo15g00081 | 840 | PRINTS | Chloride channel signature | 211 | 228 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Cmo15g00081 | 840 | PRINTS | Chloride channel signature | 242 | 261 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Cmo15g00081 | 840 | PRINTS | Chloride channel signature | 306 | 325 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Cmo15g00081 | 840 | PRINTS | Chloride channel signature | 532 | 552 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Cmo15g00081 | 840 | PRINTS | Chloride channel signature | 564 | 580 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Cmo15g00081 | 840 | PRINTS | Chloride channel signature | 582 | 601 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Cmo15g00081 | 840 | PRINTS | Chloride channel signature | 620 | 634 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Cmo15g00081 | 840 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 76 | 835 | - | - | |
| Cmo15g00081 | 840 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC-A | 76 | 835 | - | - | |
| Cmo15g00081 | 840 | Pfam | CBS domain | 769 | 819 | IPR000644 | - | |
| Cmo15g00081 | 840 | Gene3D | - | 641 | 824 | IPR046342 | - | |
| Cmo15g00081 | 840 | Pfam | Voltage gated chloride channel | 199 | 613 | IPR001807 | GO:0005247|GO:0006821|GO:0016020|GO:0055085 | |
| Cmo15g00081 | 840 | SUPERFAMILY | CBS-domain pair | 637 | 819 | IPR046342 | - | |
| Cmo15g00081 | 840 | MobiDBLite | consensus disorder prediction | 66 | 87 | - | - | |
| Cmo15g00081 | 840 | Gene3D | Clc chloride channel | 133 | 635 | - | - | |
| Cmo15g00081 | 840 | CDD | ClC_6_like | 111 | 633 | - | - | |
| Cmo15g00081 | 840 | PRINTS | Plant CLC chloride channel signature | 116 | 124 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
| Cmo15g00081 | 840 | PRINTS | Plant CLC chloride channel signature | 327 | 335 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
| Cmo15g00081 | 840 | PRINTS | Plant CLC chloride channel signature | 341 | 351 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
| Cmo15g00081 | 840 | PRINTS | Plant CLC chloride channel signature | 359 | 366 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
| Cmo15g00081 | 840 | PRINTS | Plant CLC chloride channel signature | 484 | 500 | IPR002251 | GO:0005247|GO:0006821|GO:0016020 | |
| Cmo15g00081 | 840 | SMART | cbs_1 | 770 | 823 | IPR000644 | - | |
| Cmo15g00081 | 840 | SMART | cbs_1 | 655 | 715 | IPR000644 | - | |
| Cmo15g00081 | 840 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 653 | 821 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g03081 | Cmo-Chr4:21488862 | Cmo15g00081 | Cmo-Chr15:411910 | 0 | dispersed | |
| Cmo15g00081 | Cmo-Chr15:411910 | Cmo16g00824 | Cmo-Chr16:4330802 | 0 | dispersed | |
| Cmo15g00081 | Cmo-Chr15:411910 | Cmo04g00948 | Cmo-Chr4:4837882 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo15g00081 | K05016 | - | csv:101210008 | 1442.17 |