Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00107 ATGGCCTTCTTCCTCCGCCTGCTGCAGCTTCTTATCTGCTGCGTCTCTTTCAAACAGGGCCTCTGTTTTTCTGCGACTCAGACCATGGTTTTGCCCCTCAAAACACAGATGGGTGTCACTTCTCGGCCTTCCAATAAGCTCAGTTTTCACCATAATGTCACTTTGACTGTTTCCTTAACGCTTGGCTCGCCTCCTCAACCCGTTACTATGGTTCTCGATACAGGGAGTGAACTCTCATGGCTTCACTGCAAAAAAACCCCAAATTTGAACTCTGTTTTTAACCCACTTTCTTCCTCTTCTTACTCGCCAGTCCCCTGTGCTTCCCCTGTTTGCCGGACCCGAACCCGAGATTTACCCAACCCGGTTACCTGCGACCCAAAGAAACTCTGCCACGTCTTTGTCTCTTATGCCGACGCCTCGTCGCTCGAGGGTAATCTCGCGTCGGATACGTTTCGAGTCGGGTCATCGGCTCAACCCGGAACTTTTTTTGGGTGTATGGATTCGGGTTTCAGTTCGAATTCGGAGGAGGACGCGAAGACCACTGGGCTGATGGGGATGAACAGGGGCTCGCTCTCGTTTGTCACCCAATTGGGTTTGCCCAAATTCTCTTATTGCATATCGGGTCGTGATTCTTCTGGGGTTCTGCTTTTCGGCGACGCGAGTCTTTCTTGGCTTGGGAATTTGACCTACACGCCTTTGGTTCAAATGTCTACGCCATTGCCGTATTACGACCGAGTCGCCTACACGGTCCAACTAGACGGAATCAGAGTAGGGAACAAAATTCTGGCACTCCCGAAGTCAATATTCGCACCAGACCACACCGGCGCCGGGCAAACCATGGTAGATTCAGGGACCCAGTTCACGTTTCTTCTGGGACCAGTGTACACGGCTTTAAAGAACGAGTTTGTGGTACAAACGAAGGGCATTTTGGTCCCACTGGGTGATCCAAATTTCGTGTTTCAAGGAGCGATGGACTTGTGCTACAGAGTACCCGAGAAACAGGGGAAACTGCCGCCACTGCCGGTAGTGAGTCTGATGTTCCGTGGGGCGGAGATGGTGGTTGGCGGAGAGGTGCTAATGTATAAAGTACCGGGAATGGTAAGGGGTGGTGACCAAGTGCATTGCTTGACGTTTGGGAATTCGGATTTGTTAGGAATAGAAGCATTTGTGATTGGGCATCATCATCAACAAAACGTGTGGATGGAATTCGACTTGGTGAAATCAAGGGTTGGATTTGTAGAGACGAGGTGTGATTTGGCGGCTGTCGCAACTACTGCAGACATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAAAATGGTCTATCTGGATTTATACCTGAACGGCGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTGTTCATGATGTTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTGTTTTTGATGGCTACAACATTAAGGATGTATGCGACCTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTTGGGCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCTACTAGAGGACGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATCGGGAATTTGATGATTTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTGAACCAGCAGGCTTCATCTTCAGAGTCTAATGAGAAGAGACAAGATTCAGCTAATGCAGTTGGCAGTACCAAGGCCTCGGAGGATGAACTTACGTGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGCACGTGCCCTGTTTGTAAATTCAGAGCGGTGTCTGGGTGGTCAGAACAGGGACAAGGGGAAACCGATGCGTATTCGGTTTGA 2082 48.85 MAFFLRLLQLLICCVSFKQGLCFSATQTMVLPLKTQMGVTSRPSNKLSFHHNVTLTVSLTLGSPPQPVTMVLDTGSELSWLHCKKTPNLNSVFNPLSSSSYSPVPCASPVCRTRTRDLPNPVTCDPKKLCHVFVSYADASSLEGNLASDTFRVGSSAQPGTFFGCMDSGFSSNSEEDAKTTGLMGMNRGSLSFVTQLGLPKFSYCISGRDSSGVLLFGDASLSWLGNLTYTPLVQMSTPLPYYDRVAYTVQLDGIRVGNKILALPKSIFAPDHTGAGQTMVDSGTQFTFLLGPVYTALKNEFVVQTKGILVPLGDPNFVFQGAMDLCYRVPEKQGKLPPLPVVSLMFRGAEMVVGGEVLMYKVPGMVRGGDQVHCLTFGNSDLLGIEAFVIGHHHQQNVWMEFDLVKSRVGFVETRCDLAAVATTADMSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMMLNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSANAVGSTKASEDELTCSVCLEQVNVGELFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYSV 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 519475 525423 - CmoCh15G001070.1 Cmo15g00107 397615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00107 693 Gene3D Acid Proteases 48 218 IPR021109 -
Cmo15g00107 693 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 70 81 IPR001969 GO:0004190|GO:0006508
Cmo15g00107 693 Gene3D Acid Proteases 223 424 IPR021109 -
Cmo15g00107 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 679 IPR013083 -
Cmo15g00107 693 SUPERFAMILY RING/U-box 636 679 - -
Cmo15g00107 693 PANTHER ASPARTYL PROTEASE-RELATED 9 421 IPR001461 GO:0004190|GO:0006508
Cmo15g00107 693 CDD RING-H2_PA-TM-RING 640 673 - -
Cmo15g00107 693 MobiDBLite consensus disorder prediction 598 632 - -
Cmo15g00107 693 CDD pepsin_A_like_plant 54 417 IPR034161 -
Cmo15g00107 693 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 421 - -
Cmo15g00107 693 ProSiteProfiles Peptidase family A1 domain profile. 55 413 IPR033121 -
Cmo15g00107 693 MobiDBLite consensus disorder prediction 603 632 - -
Cmo15g00107 693 Pfam Xylanase inhibitor C-terminal 247 413 IPR032799 -
Cmo15g00107 693 SUPERFAMILY Acid proteases 56 417 IPR021109 -
Cmo15g00107 693 Pfam Xylanase inhibitor N-terminal 57 219 IPR032861 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00206 Cmo15g00107 CCT
Cmo04g01246 Cmo15g00107 CCT
Cmo04g00206 Cmo15g00107 ECH
Cmo04g01246 Cmo15g00107 ECH
Cmo04g03071 Cmo15g00107 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00353 Cmo-Chr8:2183841 Cmo15g00107 Cmo-Chr15:519475 9.27E-16 dispersed
Cmo15g00107 Cmo-Chr15:519475 Cmo01g00977 Cmo-Chr1:6374300 3.43E-69 dispersed
Cmo04g03072 Cmo-Chr4:21441556 Cmo15g00107 Cmo-Chr15:519475 1.01E-161 transposed
Cmo14g00128 Cmo-Chr14:562011 Cmo15g00107 Cmo-Chr15:519475 0 wgd
Cmo15g00107 Cmo-Chr15:519475 Cmo04g03071 Cmo-Chr4:21438847 0 wgd
Cmo15g00107 Cmo-Chr15:519475 Cmo06g00287 Cmo-Chr6:1430454 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00107 - - csv:105435736 735.332