Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00111 ATGATACGGCTTGATTCTTTATCTTCCTTTGATCCTAAAAACCCAGAAGATGAAAACCAAGAAGAAGAAGAACAACAACAGCAACAACGTGATGCTAAGAATGAAGATCATCATGGAGTCAAAACCAAGAGGCGGCCGCGTGGGCGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCCATTGTCATCACCAAACACACTCCCAACGCCCTACAAAGCCACGTCTTCGAAATCACTACTGCCACCGACATTGCCCACTCCATTTCCACCTTCGCCCACCGCCGTCACCGTGGAGTCTCCATTCTCAGCGCAACTGGTGTCGTCGCCGACGTCACTCTTCGCCAGCCCGCCGGCGTCATCACGCTCCACGAACGATTCGAGATCTTGTCTCTCTCCGGCGCTTTCCTTCCCACGCCCTCTCCCCACGGGGCTACCGGCTTGACCGTCTATCTCGCGGGCGGCCATGGCCAGGTCGTCGGTGGGCTGGTCGCCGGCCCCCTCATCGCCGCTGGTACCGTCATAGTGGTTGCAGCTTCATTTACGAACGCTATGTATGAAAGATTACCGATGGAGGATGATGATGAAGAGAATGCAAAGGAGGAGAAGCAGTCGGAAGATCATATTAATGCAAATAATTCAGGGGGAGAAGCATCATCATCAGCAGCAGCAGCAGCAGCATCAGCAGCTTCGTTGCCGGTTTATGATTTGATTCCACAAACTCAAATTTCACAAGATATGTTTTGGGCTCCTCTTCCTCCTCCTCCTCCATCTTATTAA 777 52.12 MIRLDSLSSFDPKNPEDENQEEEEQQQQQRDAKNEDHHGVKTKRRPRGRPPGSKNKPKPPIVITKHTPNALQSHVFEITTATDIAHSISTFAHRRHRGVSILSATGVVADVTLRQPAGVITLHERFEILSLSGAFLPTPSPHGATGLTVYLAGGHGQVVGGLVAGPLIAAGTVIVVAASFTNAMYERLPMEDDDEENAKEEKQSEDHINANNSGGEASSSAAAAAASAASLPVYDLIPQTQISQDMFWAPLPPPPPSY 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 536548 537324 - CmoCh15G001110.1 Cmo15g00111 397619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00111 258 MobiDBLite consensus disorder prediction 189 221 - -
Cmo15g00111 258 CDD DUF296 74 180 IPR005175 -
Cmo15g00111 258 PIRSF ESCAROLA 4 252 IPR014476 GO:0003680
Cmo15g00111 258 Gene3D - 72 203 - -
Cmo15g00111 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 182 IPR005175 -
Cmo15g00111 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 258 - -
Cmo15g00111 258 MobiDBLite consensus disorder prediction 25 41 - -
Cmo15g00111 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 193 - -
Cmo15g00111 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 258 IPR014476 GO:0003680
Cmo15g00111 258 ProSiteProfiles PPC domain profile profile. 68 204 IPR005175 -
Cmo15g00111 258 MobiDBLite consensus disorder prediction 1 66 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00202 Cmo15g00111 CCT
Cmo04g01239 Cmo15g00111 CCT
Cmo04g03067 Cmo15g00111 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01693 Cmo-Chr1:12735579 Cmo15g00111 Cmo-Chr15:536548 1.19E-47 dispersed
Cmo09g00578 Cmo-Chr9:2828162 Cmo15g00111 Cmo-Chr15:536548 2.37E-44 dispersed
Cmo10g00931 Cmo-Chr10:4648077 Cmo15g00111 Cmo-Chr15:536548 3.16E-43 dispersed
Cmo15g00111 Cmo-Chr15:536548 Cmo17g00030 Cmo-Chr17:135628 2.45E-59 dispersed
Cmo15g00111 Cmo-Chr15:536548 Cmo04g03067 Cmo-Chr4:21427943 5.61E-92 wgd
Cmo15g00111 Cmo-Chr15:536548 Cmo04g01239 Cmo-Chr4:6293402 5.61E-70 wgd
Cmo15g00111 Cmo-Chr15:536548 Cmo04g00202 Cmo-Chr4:1004403 3.04E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00111 - - cmos:111444826 422.165