Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00113 ATGGCTGAGATTTGCTTTGCTGGAGATGGCGAGCCCTCTCCCCGACCAAAATCTCGACCACGAAACTCGGCTCGCCGGACAAAGGAGTTTCTTCACCACAATGCCGCTGCCGATGAATCTGCTTCGTCGTCGTCGTCGTCGCCGTCTACTCCGCCCTCGCACCAGGGACGGAAACGCCGCGGTGTTCATCATTCCCTCCGGCGGTGCAAAAAAGTGGATAATAATGTTGATGGTGTCGAGACGGCTAAATATGGGGTCACCTCTGTTTGCGGAAGAAGAAGAGAAATGGAGGACACGGTTTCGGTTCATCCATGCTTTGCTACTCACAGAAATCAACCCCAAATTCCCCTTCACTTTTTTGGGGTCTTCGACGGCCATGGCTGCTCTCATGTGTCAGTGAGGTGCGAAAATCGAATGCATGAAATATTGAAGGAAGAGATTGAAAGCGAATTAGGAGAATCAATGGAGTGGAAGACATTGATGCAACGAAGCTTTGGGCGTATGGATGAGGAGGTCAAGGAGTACTGCCATCACGACGACGGCGGCGACGACGACGACAAGAATAAAAGTACTGTTAGTTGCAGATGCAAACTCCAGACTCCTCGCCAATACGAAACCGTTGGATCGACCGCTCTGGTTGCCATCGTAACGCCCCACCAACTCATCATCTCCAACTGCGGCGATTCCCGCGCCGTGCTTTGCCGGAAAACTAGTGTCCTCCCCCTCTCCTCCGATCATAAGCCAGATCGACCGGACGAATTGTCTCGTATAGAATCGAGAGGCGGGCGAGTGATTTACTGGGACGGGGCGAGAGTGTTGGGAGTTTTAGCGATGTCAAGGGCCATAGGAGATGGTTATCTAAAACCGTACGTGATATCGGAGCCAGAGGTGGTGGTGGTGGATCGGACCGGGGAGGATGAGTTCTTAATCTTGGCCACCGATGGCCTGTGGGACGTCGTTTCCAATGAAACAGCGTGCGACGTCGTACGAACGTGCATGCGGGCTCCGCCGGCTTCCACATCATCGTTGAGCGGCAGTGACAAAACTTGCTCCGACGCCTCCATTGTGCTGACGAAGTTGGCCATGGCGAAGCATAGCTCAGATAACATTAGCGTAGTGGTCATAGATTTGAGAAGAGATGTCACCGAACTCTAA 1155 52.81 MAEICFAGDGEPSPRPKSRPRNSARRTKEFLHHNAAADESASSSSSSPSTPPSHQGRKRRGVHHSLRRCKKVDNNVDGVETAKYGVTSVCGRRREMEDTVSVHPCFATHRNQPQIPLHFFGVFDGHGCSHVSVRCENRMHEILKEEIESELGESMEWKTLMQRSFGRMDEEVKEYCHHDDGGDDDDKNKSTVSCRCKLQTPRQYETVGSTALVAIVTPHQLIISNCGDSRAVLCRKTSVLPLSSDHKPDRPDELSRIESRGGRVIYWDGARVLGVLAMSRAIGDGYLKPYVISEPEVVVVDRTGEDEFLILATDGLWDVVSNETACDVVRTCMRAPPASTSSLSGSDKTCSDASIVLTKLAMAKHSSDNISVVVIDLRRDVTEL 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 542388 544158 + CmoCh15G001130.1 Cmo15g00113 397621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00113 384 Pfam Protein phosphatase 2C 83 370 IPR001932 -
Cmo15g00113 384 Gene3D - 73 382 IPR036457 -
Cmo15g00113 384 ProSiteProfiles PPM-type phosphatase domain profile. 83 377 IPR001932 -
Cmo15g00113 384 PANTHER ALPHABET, ISOFORM E-RELATED 343 380 - -
Cmo15g00113 384 MobiDBLite consensus disorder prediction 37 54 - -
Cmo15g00113 384 MobiDBLite consensus disorder prediction 14 35 - -
Cmo15g00113 384 CDD PP2Cc 83 377 IPR001932 -
Cmo15g00113 384 ProSitePatterns PPM-type phosphatase domain signature. 119 127 IPR000222 GO:0043169
Cmo15g00113 384 PANTHER ALPHABET, ISOFORM E-RELATED 57 339 - -
Cmo15g00113 384 SUPERFAMILY PP2C-like 82 378 IPR036457 -
Cmo15g00113 384 MobiDBLite consensus disorder prediction 1 66 - -
Cmo15g00113 384 PANTHER PROTEIN PHOSPHATASE 2C 3 343 380 - -
Cmo15g00113 384 PANTHER PROTEIN PHOSPHATASE 2C 3 57 339 - -
Cmo15g00113 384 SMART PP2C_4 73 375 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00655 Cmo-Chr1:3349903 Cmo15g00113 Cmo-Chr15:542388 1.91E-119 dispersed
Cmo14g01289 Cmo-Chr14:10793271 Cmo15g00113 Cmo-Chr15:542388 1.68E-60 dispersed
Cmo15g00113 Cmo-Chr15:542388 Cmo16g00068 Cmo-Chr16:309222 3.78E-82 dispersed
Cmo15g00113 Cmo-Chr15:542388 Cmo01g00060 Cmo-Chr1:218493 1.74E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00113 K14497 - csv:101220425 438.343