Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00115 ATGGCATCCTTTTCCAGACGCCTACTCCTCTTTGCGGCGGCGCTACTCGCCGCCGCTGAAATCGCAACCTCCGCCACCCGATGCTCAGACTGCGGAGGTACTGGTGTTCCCTATCCTCTGAGTACCAGCCCCACATGTGGGGATCAATCGTACAAGATCCGGTGCGACGCAGGCTCACTGAAATTCGATACGCTGAACAATACGTACCCGATCATCGCGATCAACCCATCGGCCCAACGGCTGGTGATCCGGCCGTCTAACTTCCTCCGAGAAACGTGCGTGACAGAGGATATTGCTCACGGAGGAATCCAACTGAACAACAGTTTACCCTTCAACGTCACGAGCGGGAACACGATCCTGTACTTCAACTGCACGGATTCGCTTCTGCGCTCGCCGTTGAACTGCTCGTCGACGAGTTTGTGCCATTCGTACATCAACGGCTCGAGAGGGGCGGCGGCGTGCGAGGCGGCGCCGCTGTGCTGCACGTTTCGGGCGGGTGGGTCATCGAATTCGTACATGATTCGGGTGAGGGAGTCGGGGTGCAGCGCGTACACGAGCTTTGTGAACTTGAACCCGAGTTTGGGACTGTTGCAATGGCCTGAACCCGGGTTGGAGCTGCAGTGGCTTTCGCCGATGGAGCCGGTTTGTAATACGCAGGCTGATTGTGATGGGAACGCGGCTTGTGGTGTTGACCCAAGTGGGACCGGGTTGAAACGTTGTCTCTGTAATTCAGGGTTTCAGTGGGACCCTATTGCTGGAATCTGCTCTCAAAACACGTGTCATGATCCTGACGGTTGTAAGAAGTCCCGAACTGCACTAATAGCCGCCATTGTATCCGGCGTCGGCGCGGCGGTGCTCTTGTCAACAATAGCCATGTTAGTATACAGACGACATAGAAGAGCGAAAGAAGCTCAAGATCGCTTAACAAAGGAGCGTGAAGCAATTCTGAACTCCAACGGCGGAGGCGGAAGGAACGCAAAGATCTTCTCCGGAAAAGAGATCAAGAGGGCCACCCACAATTTCTCCGCCGATCGCCTTCTGGGTGCCGGCGGCTATGGTGAGGTCTACAAAGGCATTCTTGGGGACGGTACCACTGTAGCCGTGAAGTGCGCCAAGCTCGGAAACGCAAAAGGCACCGACCAAGTCCTGAATGAGGTCCGAATCCTCTGCCAAGTTAACCACCGGAGCCTTGTGTGGCTGCTTGGGTGCTGCGTTGAATTAGAACAGCCAATTCTGGTGTACGAGTATATCCCCAACGGCACTCTTCTGGACCATTTGCAAGGTAGTAAAGAGACAAGGGCATTAACATGGGAGCAGCGGCTCCAGATCGCGCAGAGCACAGCAGAGGGACTAGCATACCTTCATTTCTCAGCAGTCCCACCAATCTACCACCGAGACGTGAAATCCAGCAACATCCTACTAGACAATAAGCTAAACTCCAAAGTTTCGGATTTCGGCCTCTCCCGATTGGCGGAAACAGATTTAAGCCATATCTCAACTTGCGCGCAGGGTACTCTGGGGTATCTGGATCCGGAATACTACCGGAACTACCAGTTGACTGACAAGAGCGACGTGTACAGTTTCGGAGTGGTTCTGCTGGAGCTGTTGACATCGCAGAAGGCCATCGATTTCAACCGGGAGCCTGACGACGTGAATTTGGCGGTATACGTGCAGCGGATGGTGGAAGAAGAGAAATTGGTGGATGTCATCGATCCGAGGCTGAAGAAGGGAGCCACGGACATGGAGGTTGACACGATGAAGGCTTTGGGGTTTCTGGCAGTGGGATGCTTGGAAGAGAGAAGGCAGAATCGGCCTTCCATGAAAGAGGTGGTGGAGGAGATTCAGTACATCATAAGCGTCGCCACTGCCAAGCCTTAA 1878 54.26 MASFSRRLLLFAAALLAAAEIATSATRCSDCGGTGVPYPLSTSPTCGDQSYKIRCDAGSLKFDTLNNTYPIIAINPSAQRLVIRPSNFLRETCVTEDIAHGGIQLNNSLPFNVTSGNTILYFNCTDSLLRSPLNCSSTSLCHSYINGSRGAAACEAAPLCCTFRAGGSSNSYMIRVRESGCSAYTSFVNLNPSLGLLQWPEPGLELQWLSPMEPVCNTQADCDGNAACGVDPSGTGLKRCLCNSGFQWDPIAGICSQNTCHDPDGCKKSRTALIAAIVSGVGAAVLLSTIAMLVYRRHRRAKEAQDRLTKEREAILNSNGGGGRNAKIFSGKEIKRATHNFSADRLLGAGGYGEVYKGILGDGTTVAVKCAKLGNAKGTDQVLNEVRILCQVNHRSLVWLLGCCVELEQPILVYEYIPNGTLLDHLQGSKETRALTWEQRLQIAQSTAEGLAYLHFSAVPPIYHRDVKSSNILLDNKLNSKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNREPDDVNLAVYVQRMVEEEKLVDVIDPRLKKGATDMEVDTMKALGFLAVGCLEERRQNRPSMKEVVEEIQYIISVATAKP 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 551544 554110 + CmoCh15G001150.1 Cmo15g00115 397623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00115 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Cmo15g00115 625 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 622 IPR045274 GO:0007166
Cmo15g00115 625 PANTHER OS05G0318100 PROTEIN 17 622 - -
Cmo15g00115 625 CDD STKc_IRAK 347 615 - -
Cmo15g00115 625 Gene3D Transferase(Phosphotransferase) domain 1 417 624 - -
Cmo15g00115 625 Pfam Protein tyrosine and serine/threonine kinase 344 613 IPR001245 GO:0004672|GO:0006468
Cmo15g00115 625 SUPERFAMILY Protein kinase-like (PK-like) 326 613 IPR011009 -
Cmo15g00115 625 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00115 625 SMART serkin_6 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00115 625 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Cmo15g00115 625 Gene3D Phosphorylase Kinase; domain 1 317 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00751 Cmo-Chr7:3406838 Cmo15g00115 Cmo-Chr15:551544 1.79E-92 dispersed
Cmo12g00445 Cmo-Chr12:2737861 Cmo15g00115 Cmo-Chr15:551544 3.29E-93 dispersed
Cmo15g00115 Cmo-Chr15:551544 Cmo04g02521 Cmo-Chr4:18557946 1.17E-91 dispersed
Cmo15g00654 Cmo-Chr15:3163820 Cmo15g00115 Cmo-Chr15:551544 1.78E-88 dispersed
Cmo05g01104 Cmo-Chr5:8797186 Cmo15g00115 Cmo-Chr15:551544 1.82E-42 transposed
Cmo06g00422 Cmo-Chr6:2031132 Cmo15g00115 Cmo-Chr15:551544 0 transposed
Cmo15g00115 Cmo-Chr15:551544 Cmo07g01055 Cmo-Chr7:5370828 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74894 PF07714 PK_Tyr_Ser-Thr 1.10E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00115 - - csv:101220186 1065.06