Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00126 ATGACGACCACCCAAAACTCCCACGTTGTCGCAATGGAGGTAGGAGAAGTAGAACAGCCTCGCCGGACTTCAGCCGCCGGCGCTGACGCCTTACTAGCCTCCAATGATGTGCGGCAGTGCTCGGGGCAGTCGAGGGCTGAGATTGTGGGGGCGGCGGCGGAGAAAAGAAGGGAATCCTCTGTGTCGGAGTGCTCTGTAGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGTTACATTTGACGAAAATGGAGAGGGATTGTCGGATTTGCCATCTGAGTTTGGATGCTTCTAATCAGGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGATGACTTGGCTGCTGCTCATAAGCACTGTGCTGAAGCTTGGTTCAAGATCAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGCTACTTATGAACCTGATTCGACAGAGCAACGCAACGACTCAAACGACGCAACAACAGCAACCGCAGCAGCAGCTGTGGTAGTGCCACCACACTCTACAGAGGCTCGGAACTTCTGGCAGGGCCATAGGTTCCTGAATTTCTTACTCGCCTGCATGGTCTTTGCCTTTGTCATATCATGGCTGTTTCACTTCAAAATACCCTCATAG 648 51.08 MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESSVSECSVEMDLECGLAEIKLHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAVVVPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 602427 604279 - CmoCh15G001260.1 Cmo15g00126 397634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00126 215 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 215 - -
Cmo15g00126 215 SUPERFAMILY RING/U-box 85 142 - -
Cmo15g00126 215 ProSiteProfiles Zinc finger RING-CH-type profile. 80 146 IPR011016 GO:0008270
Cmo15g00126 215 CDD RING_CH-C4HC3_MARCH 88 140 - -
Cmo15g00126 215 PANTHER ZINC FINGER, RING-CH-TYPE 5 215 - -
Cmo15g00126 215 Pfam RING-variant domain 88 139 IPR011016 GO:0008270
Cmo15g00126 215 SMART ringv_2 87 140 IPR011016 GO:0008270
Cmo15g00126 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 149 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g03049 Cmo15g00126 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01980 Cmo-Chr11:13608358 Cmo15g00126 Cmo-Chr15:602427 1.52E-21 dispersed
Cmo13g00088 Cmo-Chr13:532189 Cmo15g00126 Cmo-Chr15:602427 3.84E-45 dispersed
Cmo15g00126 Cmo-Chr15:602427 Cmo01g01384 Cmo-Chr1:10893944 5.86E-12 dispersed
Cmo14g00095 Cmo-Chr14:448197 Cmo15g00126 Cmo-Chr15:602427 6.03E-62 wgd
Cmo15g00126 Cmo-Chr15:602427 Cmo04g03049 Cmo-Chr4:21346815 3.70E-123 wgd
Cmo15g00126 Cmo-Chr15:602427 Cmo06g00261 Cmo-Chr6:1331216 5.24E-77 wgd
Cmo15g00126 Cmo-Chr15:602427 Cmo07g01079 Cmo-Chr7:5607475 8.22E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00126 - - cpep:111788319 346.28