Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00136 ATGGCAACGACGGAGAGCACGGTCTTACAATTTTCACAGTCTTCTAACACGTTATCTGCGAAGGTTCACCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCTGACCAGGCAGATCGAGTAATCGGTACTCTTCTTGGCTCGGTTTTACCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAACGAGTTTTCGGATCAGGTTGCTCTGGATATTGACTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAGGTTATCGTTGGATGGTACTCAACTGGTATGGGAGTTACGGGTGGCAGTGCATTGATACACGAATTTTATTCTAGAGAAGTTGCAAACCCTATTCATCTGACCGTTGATACTGGATTTAACAATGGTGAAGGAACAATAAAAGCCTATATCTCTGTCAATTTGTCCCTCGGAGATAGACAGCTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGATCGAAGCTGAGAGACTTGGATTTGATATTCTGAAGACAACTTCTGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATCGACGATATTTACAAATATGTTGATAACGTTGTGGAAGGGCATGTTGAGGCAGACAACACGATAGGGAGATTTCTTGCTGACACTGTAGCCTCTCTTCCAAAACTGTCGCCAGCTGCTTTCGATAAGCTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTATCAAGTATCACCAGAACACAGCTGAGCTTGGCTGAAAAGTTGAATACGGCTGCTCAGATTCTGTAA 858 42.42 MATTESTVLQFSQSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGMGVTGGSALIHEFYSREVANPIHLTVDTGFNNGEGTIKAYISVNLSLGDRQLAAQFQEIPLDLRMIEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVASLPKLSPAAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 637226 640336 - CmoCh15G001360.1 Cmo15g00136 397644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00136 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Cmo15g00136 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cmo15g00136 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Cmo15g00136 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cmo15g00136 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Cmo15g00136 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 121 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cmo15g00136 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 17 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cmo15g00136 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cmo15g00136 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 17 284 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g03037 Cmo15g00136 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01113 Cmo-Chr7:5878507 Cmo15g00136 Cmo-Chr15:637226 8.01E-20 dispersed
Cmo15g00136 Cmo-Chr15:637226 Cmo09g01053 Cmo-Chr9:5673849 1.29E-10 dispersed
Cmo14g00074 Cmo-Chr14:368145 Cmo15g00136 Cmo-Chr15:637226 3.39E-33 wgd
Cmo15g00136 Cmo-Chr15:637226 Cmo04g03037 Cmo-Chr4:21297835 0 wgd
Cmo15g00136 Cmo-Chr15:637226 Cmo06g00232 Cmo-Chr6:1239145 2.50E-33 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00136 K03249 - csv:101205957 553.903